ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl17b11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469219.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3742 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Minus Query: 250 agtgaggccaacttcttctccgggcgctttgctgagcgaagggcctccagagcctctgcc 309 ||||| ||||||||||||||| | ||||||||||| || ||||||||||||||||||| | Sbjct: 3422 agtgatgccaacttcttctccagccgctttgctgatcggagggcctccagagcctctgtc 3363 Query: 310 tgcttcccttcccgcttcaaggtcagggccttcagtttctcagcctttatctgttcctcg 369 || |||||||| ||||||||| | || |||||||||||||||||||| || |||||||| Sbjct: 3362 tgtttcccttcacgcttcaagtttagagccttcagtttctcagccttaatatgttcctca 3303 Query: 370 agctgacttctctcagtctgagccttgcttgtagccgccacggttggccttgcctctgct 429 ||||| | ||||| |||||| |||| ||||||| ||||| |||||| ||||||| ||| Sbjct: 3302 agctgggtcttctcactctgaggcttggttgtagctgccacagttggctttgcctcagct 3243 Query: 430 ttc 432 ||| Sbjct: 3242 ttc 3240
>gb|AC146718.2| Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence Length = 49565 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Plus Query: 250 agtgaggccaacttcttctccgggcgctttgctgagcgaagggcctccagagcctctgcc 309 ||||| ||||||||||||||| | ||||||||||| || ||||||||||||||||||| | Sbjct: 38374 agtgatgccaacttcttctccagccgctttgctgatcggagggcctccagagcctctgtc 38433 Query: 310 tgcttcccttcccgcttcaaggtcagggccttcagtttctcagcctttatctgttcctcg 369 || |||||||| ||||||||| | || |||||||||||||||||||| || |||||||| Sbjct: 38434 tgtttcccttcacgcttcaagtttagagccttcagtttctcagccttaatatgttcctca 38493 Query: 370 agctgacttctctcagtctgagccttgcttgtagccgccacggttggccttgcctctgct 429 ||||| | ||||| |||||| |||| ||||||| ||||| |||||| ||||||| ||| Sbjct: 38494 agctgggtcttctcactctgaggcttggttgtagctgccacagttggctttgcctcagct 38553 Query: 430 ttc 432 ||| Sbjct: 38554 ttc 38556
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Minus Query: 250 agtgaggccaacttcttctccgggcgctttgctgagcgaagggcctccagagcctctgcc 309 ||||| ||||||||||||||| | ||||||||||| || ||||||||||||||||||| | Sbjct: 26147452 agtgatgccaacttcttctccagccgctttgctgatcggagggcctccagagcctctgtc 26147393 Query: 310 tgcttcccttcccgcttcaaggtcagggccttcagtttctcagcctttatctgttcctcg 369 || |||||||| ||||||||| | || |||||||||||||||||||| || |||||||| Sbjct: 26147392 tgtttcccttcacgcttcaagtttagagccttcagtttctcagccttaatatgttcctca 26147333 Query: 370 agctgacttctctcagtctgagccttgcttgtagccgccacggttggccttgcctctgct 429 ||||| | ||||| |||||| |||| ||||||| ||||| |||||| ||||||| ||| Sbjct: 26147332 agctgggtcttctcactctgaggcttggttgtagctgccacagttggctttgcctcagct 26147273 Query: 430 ttc 432 ||| Sbjct: 26147272 ttc 26147270
>gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genomic sequence, complete sequence Length = 139187 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Plus Query: 250 agtgaggccaacttcttctccgggcgctttgctgagcgaagggcctccagagcctctgcc 309 ||||| ||||||||||||||| | ||||||||||| || ||||||||||||||||||| | Sbjct: 9098 agtgatgccaacttcttctccagccgctttgctgatcggagggcctccagagcctctgtc 9157 Query: 310 tgcttcccttcccgcttcaaggtcagggccttcagtttctcagcctttatctgttcctcg 369 || |||||||| ||||||||| | || |||||||||||||||||||| || |||||||| Sbjct: 9158 tgtttcccttcacgcttcaagtttagagccttcagtttctcagccttaatatgttcctca 9217 Query: 370 agctgacttctctcagtctgagccttgcttgtagccgccacggttggccttgcctctgct 429 ||||| | ||||| |||||| |||| ||||||| ||||| |||||| ||||||| ||| Sbjct: 9218 agctgggtcttctcactctgaggcttggttgtagctgccacagttggctttgcctcagct 9277 Query: 430 ttc 432 ||| Sbjct: 9278 ttc 9280
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 165 bits (83), Expect = 2e-37 Identities = 158/183 (86%) Strand = Plus / Minus Query: 250 agtgaggccaacttcttctccgggcgctttgctgagcgaagggcctccagagcctctgcc 309 ||||| ||||||||||||||| | ||||||||||| || ||||||||||||||||||| | Sbjct: 26238761 agtgatgccaacttcttctccagccgctttgctgatcggagggcctccagagcctctgtc 26238702 Query: 310 tgcttcccttcccgcttcaaggtcagggccttcagtttctcagcctttatctgttcctcg 369 || |||||||| ||||||||| | || |||||||||||||||||||| || |||||||| Sbjct: 26238701 tgtttcccttcacgcttcaagtttagagccttcagtttctcagccttaatatgttcctca 26238642 Query: 370 agctgacttctctcagtctgagccttgcttgtagccgccacggttggccttgcctctgct 429 ||||| | ||||| |||||| |||| ||||||| ||||| |||||| ||||||| ||| Sbjct: 26238641 agctgggtcttctcactctgaggcttggttgtagctgccacagttggctttgcctcagct 26238582 Query: 430 ttc 432 ||| Sbjct: 26238581 ttc 26238579
>gb|AY107704.1| Zea mays PCO110174 mRNA sequence Length = 1123 Score = 131 bits (66), Expect = 2e-27 Identities = 111/126 (88%) Strand = Plus / Minus Query: 258 caacttcttctccgggcgctttgctgagcgaagggcctccagagcctctgcctgcttccc 317 ||||||||||||| | |||||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 845 caacttcttctccagtcgctttgccgagcgaagggcctccagggcctctgcttgtttccc 786 Query: 318 ttcccgcttcaaggtcagggccttcagtttctcagcctttatctgttcctcgagctgact 377 ||||||||||||| | || || ||||||||||| ||||| |||||||| || || ||||| Sbjct: 785 ttcccgcttcaagttaagcgctttcagtttctccgccttgatctgttcttcaagttgact 726 Query: 378 tctctc 383 |||||| Sbjct: 725 tctctc 720
>gb|AC013456.8| Homo sapiens BAC clone RP11-30M1 from 2, complete sequence Length = 42683 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 201 cttaccaaataaaaatgtgaggtaa 225 ||||||||||||||||||||||||| Sbjct: 15704 cttaccaaataaaaatgtgaggtaa 15680
>ref|XM_510240.1| PREDICTED: Pan troglodytes similar to ATP-dependent RNA helicase DDX24 (DEAD-box protein 24) (LOC453249), mRNA Length = 673 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 401 cttcagttgctacatttttac 381
>ref|XM_370184.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06681.4) partial mRNA Length = 1146 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 73 tacatacacacatgaccaaagatgc 97 |||||||||||||| |||||||||| Sbjct: 631 tacatacacacatgcccaaagatgc 655
>gb|BC008847.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, mRNA (cDNA clone MGC:14392 IMAGE:4301025), complete cds Length = 2949 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 406 cttcagttgctacatttttac 386
>ref|NM_020414.3| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 (DDX24), mRNA Length = 2967 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 430 cttcagttgctacatttttac 410
>emb|AL354682.22| Human DNA sequence from clone RP11-282L14 on chromosome 9, complete sequence Length = 108785 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 tgcacctggctcacaagttat 120 ||||||||||||||||||||| Sbjct: 28983 tgcacctggctcacaagttat 29003
>emb|AL136886.1|HSM801854 Homo sapiens mRNA; cDNA DKFZp434A0772 (from clone DKFZp434A0772) Length = 2938 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 406 cttcagttgctacatttttac 386
>emb|CR857893.1| Pongo pygmaeus mRNA; cDNA DKFZp459P2030 (from clone DKFZp459P2030) Length = 3028 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 425 cttcagttgctacatttttac 405
>emb|CR615921.1| full-length cDNA clone CS0DC025YB11 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 2871 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 369 cttcagttgctacatttttac 349
>dbj|AK094555.1| Homo sapiens cDNA FLJ37236 fis, clone BRAMY2002584, highly similar to H.sapiens mRNA from TYL gene Length = 4688 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 4502 cttcagttgctacatttttac 4522
>emb|CR596324.1| full-length cDNA clone CS0DI087YN04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2756 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 402 cttcagttgctacatttttac 382
>dbj|AB220399.1| Macaca fascicularis mRNA, clone QccE-11928: similar to Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 (DDX24), mRNA, NM_020414.3 Length = 2853 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 309 cttcagttgctacatttttac 289
>ref|NM_143196.1| Drosophila melanogaster CG8968-RA (CG8968), mRNA Length = 3813 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 gggcctccagagcctctgcct 310 ||||||||||||||||||||| Sbjct: 3439 gggcctccagagcctctgcct 3419
>gb|AC021736.9| Homo sapiens chromosome 8, clone RP11-115J16, complete sequence Length = 158806 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 ggattgacttaccaaataaaa 214 ||||||||||||||||||||| Sbjct: 156587 ggattgacttaccaaataaaa 156607
>gb|AC022784.7| Homo sapiens chromosome 8, clone RP11-10A14, complete sequence Length = 187253 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 194 ggattgacttaccaaataaaa 214 ||||||||||||||||||||| Sbjct: 88723 ggattgacttaccaaataaaa 88743
>gb|BC096826.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, mRNA (cDNA clone MGC:111390 IMAGE:30925011), complete cds Length = 2787 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 401 cttcagttgctacatttttac 381
>gb|AF161446.1|AF161446 Homo sapiens HSPC328 mRNA, partial cds Length = 517 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 385 cttcagttgctacatttttac 365
>gb|AC007825.6|AC007825 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone BACR13F13, complete sequence Length = 179171 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 gggcctccagagcctctgcct 310 ||||||||||||||||||||| Sbjct: 34078 gggcctccagagcctctgcct 34058
>gb|AC010120.5|AC010120 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone BACR22N13, complete sequence Length = 177376 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 gggcctccagagcctctgcct 310 ||||||||||||||||||||| Sbjct: 113274 gggcctccagagcctctgcct 113254
>gb|AF214731.1|AF214731 Homo sapiens ATP-dependent RNA helicase (DDX24) mRNA, complete cds Length = 2971 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 429 cttcagttgctacatttttac 409
>dbj|AK025162.1| Homo sapiens cDNA: FLJ21509 fis, clone COL05745 Length = 2963 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 426 cttcagttgctacatttttac 406
>gb|BC009406.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 24, mRNA (cDNA clone MGC:14942 IMAGE:4303448), complete cds Length = 2949 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 406 cttcagttgctacatttttac 386
>gb|AE003754.4| Drosophila melanogaster chromosome 3R, section 92 of 118 of the complete sequence Length = 214365 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 290 gggcctccagagcctctgcct 310 ||||||||||||||||||||| Sbjct: 92898 gggcctccagagcctctgcct 92878
>emb|AL079302.7|CNS00M8S Human chromosome 14 DNA sequence BAC R-1089B7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 204230 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 164749 cttcagttgctacatttttac 164769
>emb|BX537533.1|HSM806073 Homo sapiens mRNA; cDNA DKFZp686E1786 (from clone DKFZp686E1786) Length = 5630 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 417 cttcagttgctacatttttac 397
>dbj|AB209382.1| Homo sapiens mRNA for DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 variant protein Length = 5511 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cttcagttgctacatttttac 75 ||||||||||||||||||||| Sbjct: 350 cttcagttgctacatttttac 330
>gb|AC163337.2| Mus musculus chromosome 5, clone RP23-297I15, complete sequence Length = 154578 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 tcagcctttatctgttcctc 368 |||||||||||||||||||| Sbjct: 148919 tcagcctttatctgttcctc 148900
>gb|AC161262.2| Mus musculus BAC clone RP23-325G1 from chromosome 9, complete sequence Length = 204750 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ttgttgccccagcaacttca 59 |||||||||||||||||||| Sbjct: 38647 ttgttgccccagcaacttca 38628
>ref|XM_824135.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.3520) partial mRNA Length = 3021 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 agtgaggccaacttcttctc 269 |||||||||||||||||||| Sbjct: 977 agtgaggccaacttcttctc 958
>gb|AC125400.4| Mus musculus BAC clone RP24-380E10 from chromosome 10, complete sequence Length = 154681 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tacatttttacatacacaca 84 |||||||||||||||||||| Sbjct: 96548 tacatttttacatacacaca 96567
>gb|AC124373.4| Mus musculus BAC clone RP24-562D16 from chromosome 12, complete sequence Length = 168916 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 87 accaaagatgctgtgcacctggctcaca 114 |||||||| ||||| ||||||||||||| Sbjct: 23972 accaaagaagctgtacacctggctcaca 23999
>gb|AC087699.11| Homo sapiens chromosome 15, clone RP11-64K10, complete sequence Length = 149287 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ttgctacatttttacataca 80 |||||||||||||||||||| Sbjct: 2858 ttgctacatttttacataca 2839
>gb|AC124541.4| Mus musculus BAC clone RP23-257F7 from 7, complete sequence Length = 145556 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 tgcacctggctcacaagtta 119 |||||||||||||||||||| Sbjct: 135769 tgcacctggctcacaagtta 135788
>emb|AL592218.8| Human DNA sequence from clone RP5-1033M2 on chromosome 1 Contains the 3' end of the ITGB3BP gene for integrin beta 3 binding protein (beta3-endonexin) and the 3' end of the ALG6 gene for asparagine-linked glycosylation 6 homolog (yeast alpha-1 3-glucosyltransferase), complete sequence Length = 39383 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 acacacatgaccaaagatgc 97 |||||||||||||||||||| Sbjct: 20827 acacacatgaccaaagatgc 20808
>emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in linkage group 9, complete sequence Length = 173526 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tcagggccttcagtttctca 351 |||||||||||||||||||| Sbjct: 10213 tcagggccttcagtttctca 10194
>gb|AC080005.24| Homo sapiens 3 BAC RP11-475N22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169583 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 tggccttgcctctgctttca 433 |||||||||||||||||||| Sbjct: 104297 tggccttgcctctgctttca 104278
>emb|AL604062.15| Mouse DNA sequence from clone RP23-104B6 on chromosome 11 Contains a novel gene, a ferritin light chain (Ftl) pseudogene and a CpG island, complete sequence Length = 216510 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 tacatttttacatacacaca 84 |||||||||||||||||||| Sbjct: 35516 tacatttttacatacacaca 35535
>gb|AC090163.10| Homo sapiens chromosome 11, clone RP11-706A13, complete sequence Length = 194642 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 agttgctacatttttacatacaca 82 ||||| |||||||||||||||||| Sbjct: 61520 agttggtacatttttacatacaca 61543
>gb|AC087447.5| Homo sapiens chromosome 11, clone RP11-655D7, complete sequence Length = 113695 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 agttgctacatttttacatacaca 82 ||||| |||||||||||||||||| Sbjct: 96564 agttggtacatttttacatacaca 96587
>gb|AC034187.6| Homo sapiens chromosome 3 clone RP11-202A21 map 3p, complete sequence Length = 171716 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gcctctgcctgcttcccttc 320 |||||||||||||||||||| Sbjct: 60821 gcctctgcctgcttcccttc 60802
>gb|AF176315.2|AF176315 Homo sapiens chromosome 3 clone RP11-83M12 map 3p, complete sequence Length = 170755 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gcctctgcctgcttcccttc 320 |||||||||||||||||||| Sbjct: 149612 gcctctgcctgcttcccttc 149593
>gb|AC010883.8| Homo sapiens BAC clone RP11-339H12 from 2, complete sequence Length = 215532 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ggccttcagtttctcagcct 355 |||||||||||||||||||| Sbjct: 92041 ggccttcagtttctcagcct 92060
>gb|AC009434.19| Homo sapiens chromosome 15, clone RP11-96C21, complete sequence Length = 177207 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ttgctacatttttacataca 80 |||||||||||||||||||| Sbjct: 147625 ttgctacatttttacataca 147606
>gb|AC167016.5| Mus musculus chromosome 3, clone RP23-76C12, complete sequence Length = 225524 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 cctctgcctgcttcccttcc 321 |||||||||||||||||||| Sbjct: 149272 cctctgcctgcttcccttcc 149291
>emb|AL807245.17| Mouse DNA sequence from clone RP23-102B2 on chromosome 11, complete sequence Length = 114581 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 tactttggagtcatcaaaac 37 |||||||||||||||||||| Sbjct: 63422 tactttggagtcatcaaaac 63403
>gb|AC005389.1|AC005389 Homo sapiens chromosome 17, clone hRPK.601_N_13, complete sequence Length = 120359 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 cagtttctcagcctttatctgttc 365 |||||| ||||||||||||||||| Sbjct: 98668 cagtttttcagcctttatctgttc 98645
>gb|AC149605.7| Mus musculus BAC clone RP23-473E20 from 7, complete sequence Length = 195585 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tgcacctggctcacaagtta 119 |||||||||||||||||||| Sbjct: 76533 tgcacctggctcacaagtta 76514
>gb|AC132414.4| Mus musculus BAC clone RP23-383E9 from 12, complete sequence Length = 185894 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 87 accaaagatgctgtgcacctggctcaca 114 |||||||| ||||| ||||||||||||| Sbjct: 162798 accaaagaagctgtacacctggctcaca 162825 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,025,113 Number of Sequences: 3902068 Number of extensions: 5025113 Number of successful extensions: 98201 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98062 Number of HSP's gapped (non-prelim): 139 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
