Clone Name | rbastl17b10 |
---|---|
Clone Library Name | barley_pub |
>gb|AE017308.1| Mycoplasma mobile 163K complete genome Length = 777079 Score = 44.1 bits (22), Expect = 0.065 Identities = 25/26 (96%) Strand = Plus / Minus Query: 7 tgataatgggacaaaaaataatttag 32 |||||||||||| ||||||||||||| Sbjct: 118176 tgataatgggactaaaaataatttag 118151
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 42.1 bits (21), Expect = 0.26 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 acaaaaaataatttagaggga 37 ||||||||||||||||||||| Sbjct: 533224 acaaaaaataatttagaggga 533244
>gb|AC018618.5|AC018618 Homo sapiens chromosome 15, clone RP11-162I7, complete sequence Length = 156542 Score = 42.1 bits (21), Expect = 0.26 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 tgataatgggacaaaaaataa 27 ||||||||||||||||||||| Sbjct: 65750 tgataatgggacaaaaaataa 65770
>emb|CT737352.3| Human DNA sequence from clone XX-HCC1954_35H21, complete sequence Length = 158492 Score = 42.1 bits (21), Expect = 0.26 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 ataatgggacaaaaaataatttaga 33 ||||||||||||||||||| ||||| Sbjct: 674 ataatgggacaaaaaataaattaga 650
>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence Length = 187685 Score = 42.1 bits (21), Expect = 0.26 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 ataatgggacaaaaaataatttaga 33 ||||||||||||||||||| ||||| Sbjct: 9768 ataatgggacaaaaaataaattaga 9744
>gb|AC155226.4| Rhinolophus ferrumequinum clone VMRC7-267P18, complete sequence Length = 44085 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaaataatttagagggaaca 40 |||||||||||||||||||| Sbjct: 18455 aaaataatttagagggaaca 18474
>emb|BX296532.7| Zebrafish DNA sequence from clone CH211-281C19 in linkage group 24, complete sequence Length = 155029 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctggactgataatccctgca 83 |||||||||||||||||||| Sbjct: 95073 ctggactgataatccctgca 95092
>gb|AC004955.3| Homo sapiens PAC clone RP5-1087M19 from 7, complete sequence Length = 120557 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 atttagagggaacattttac 46 |||||||||||||||||||| Sbjct: 45817 atttagagggaacattttac 45836
>emb|BX784022.6| Zebrafish DNA sequence from clone CH211-152C8 in linkage group 18, complete sequence Length = 153244 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctggactgataatccctgca 83 |||||||||||||||||||| Sbjct: 95028 ctggactgataatccctgca 95047
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold Length = 1756392 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaaataatttagagggaaca 40 |||||||||||||||||||| Sbjct: 597808 aaaataatttagagggaaca 597827
>gb|AC147213.3| Pan troglodytes BAC clone RP43-127I22 from chromosome 7, complete sequence Length = 205208 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 atttagagggaacattttac 46 |||||||||||||||||||| Sbjct: 136324 atttagagggaacattttac 136305
>gb|AC124156.3| Equus caballus clone CH241-280K8, complete sequence Length = 184661 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaaataatttagagggaaca 40 |||||||||||||||||||| Sbjct: 65714 aaaataatttagagggaaca 65733
>emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in linkage group 3, complete sequence Length = 165569 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gagggaacattttacaaggg 51 |||||||||||||||||||| Sbjct: 164182 gagggaacattttacaaggg 164163
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaaataatttagagggaaca 40 |||||||||||||||||||| Sbjct: 727997 aaaataatttagagggaaca 728016
>emb|AL607074.13| Mouse DNA sequence from clone RP23-174M9 on chromosome 4, complete sequence Length = 204428 Score = 40.1 bits (20), Expect = 1.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aaaataatttagagggaaca 40 |||||||||||||||||||| Sbjct: 37770 aaaataatttagagggaaca 37789
>ref|NM_112217.2| Arabidopsis thaliana unknown protein AT3G13680 mRNA, complete cds Length = 1433 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 attttacaagggagagatt 58 ||||||||||||||||||| Sbjct: 689 attttacaagggagagatt 707
>ref|NM_112547.3| Arabidopsis thaliana unknown protein AT3G16740 mRNA, complete cds Length = 1494 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 attttacaagggagagatt 58 ||||||||||||||||||| Sbjct: 880 attttacaagggagagatt 898
>ref|NM_112961.1| Arabidopsis thaliana unknown protein AT3G20700 mRNA, complete cds Length = 981 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 attttacaagggagagatt 58 ||||||||||||||||||| Sbjct: 566 attttacaagggagagatt 584
>gb|AE001412.2| Plasmodium falciparum 3D7 chromosome 2 section 49 of 73 of the complete sequence Length = 12028 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 9 ataatgggacaaaaaataattta 31 ||||||||||| ||||||||||| Sbjct: 8712 ataatgggacacaaaataattta 8690
>gb|AC125273.9| Mus musculus chromosome 1, clone RP24-156N4, complete sequence Length = 187198 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aatgggacaaaaaataatt 29 ||||||||||||||||||| Sbjct: 81449 aatgggacaaaaaataatt 81431
>ref|NM_015341.3| Homo sapiens barren homolog 1 (Drosophila) (BRRN1), mRNA Length = 4495 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 gagagattgctgactggac 69 ||||||||||||||||||| Sbjct: 2951 gagagattgctgactggac 2969
>gb|AC123833.3| Mus musculus BAC clone RP24-127A22 from chromosome 13, complete sequence Length = 146493 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 tagagggaacattttacaa 48 ||||||||||||||||||| Sbjct: 43782 tagagggaacattttacaa 43764
>gb|AC146254.2| Pan troglodytes BAC clone CH251-128L22 from Y, complete sequence Length = 177240 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 aagggagagattgctgactggac 69 ||||||||||||||||| ||||| Sbjct: 78217 aagggagagattgctgaatggac 78239
>gb|AE004208.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 116 of 251 of the complete chromosome Length = 10254 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 57 ttgctgactggactgataatccc 79 |||||||||||| |||||||||| Sbjct: 8799 ttgctgactggattgataatccc 8777
>emb|Z98743.1|HS181C9 Human DNA sequence from clone RP1-181C9 on chromosome 22q13.2-13.33, complete sequence Length = 92472 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 37 aacattttacaagggagagattg 59 |||||||||||| |||||||||| Sbjct: 67834 aacattttacaacggagagattg 67812
>emb|AL662888.5| Human DNA sequence from clone RP11-229H19 on chromosome 1, complete sequence Length = 48023 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aatgggacaaaaaataatt 29 ||||||||||||||||||| Sbjct: 14779 aatgggacaaaaaataatt 14761
>emb|AL049596.15|HSJ300A12 Human DNA sequence from clone RP1-300A12 on chromosome 1q24.1-24.3 Contains STSs and GSSs, complete sequence Length = 56854 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 atgggacaaaaaataattt 30 ||||||||||||||||||| Sbjct: 31764 atgggacaaaaaataattt 31746
>gb|AC157921.5| Mus musculus chromosome 1, clone RP23-129L19, complete sequence Length = 220521 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 aatgggacaaaaaataatt 29 ||||||||||||||||||| Sbjct: 86346 aatgggacaaaaaataatt 86364
>gb|AC162301.3| Mus musculus chromosome 15, clone RP24-282H6, complete sequence Length = 171176 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 31 agagggaacattttacaagggag 53 |||||||||||||| |||||||| Sbjct: 63094 agagggaacattttccaagggag 63072
>dbj|BS000629.2| Pan troglodytes chromosome Y clone: PTB-194O02, complete sequence Length = 184689 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 aagggagagattgctgactggac 69 ||||||||||||||||| ||||| Sbjct: 143859 aagggagagattgctgaatggac 143881
>dbj|BS000552.1| Pan troglodytes chromosome Y clone:PTB-302F24, complete sequences Length = 157728 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 aagggagagattgctgactggac 69 ||||||||||||||||| ||||| Sbjct: 66235 aagggagagattgctgaatggac 66213
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 aagggagagattgctgactggac 69 ||||||||||||||||| ||||| Sbjct: 17997842 aagggagagattgctgaatggac 17997820
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 gagattgctgactggactg 71 ||||||||||||||||||| Sbjct: 1186199 gagattgctgactggactg 1186217
>gb|AC021188.6| Homo sapiens BAC clone RP11-759A7 from 2, complete sequence Length = 236486 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 gagagattgctgactggac 69 ||||||||||||||||||| Sbjct: 108412 gagagattgctgactggac 108430
>gb|AC040164.5|AC040164 Homo sapiens chromosome 16 clone RP11-358B6, complete sequence Length = 164968 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 aaaaaataatttagaggga 37 ||||||||||||||||||| Sbjct: 75189 aaaaaataatttagaggga 75207
>emb|BX822303.1|CNS0A642 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1366 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 attttacaagggagagatt 58 ||||||||||||||||||| Sbjct: 851 attttacaagggagagatt 869
>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence Length = 132990 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 gataatccctgcaagttccatcc 93 |||||| |||||||||||||||| Sbjct: 7874 gataatacctgcaagttccatcc 7852
>gb|AC007907.3| Homo sapiens chromosome 16 clone RP11-324D17, complete sequence Length = 170669 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 aaaaaataatttagaggga 37 ||||||||||||||||||| Sbjct: 136223 aaaaaataatttagaggga 136205
>gb|BT004826.1| Arabidopsis thaliana At3g16740 gene, complete cds Length = 1176 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 attttacaagggagagatt 58 ||||||||||||||||||| Sbjct: 737 attttacaagggagagatt 755
>gb|AC002531.1|AC002531 Homo sapiens chromosome Y, clone 486_O_8, complete sequence Length = 197900 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 aagggagagattgctgactggac 69 ||||||||||||||||| ||||| Sbjct: 189859 aagggagagattgctgaatggac 189837
>dbj|AP002034.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F3H11 Length = 33442 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 attttacaagggagagatt 58 ||||||||||||||||||| Sbjct: 27945 attttacaagggagagatt 27927
>dbj|AP001307.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMM17 Length = 80733 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 attttacaagggagagatt 58 ||||||||||||||||||| Sbjct: 22886 attttacaagggagagatt 22868
>dbj|AB022217.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGL6 Length = 79459 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 attttacaagggagagatt 58 ||||||||||||||||||| Sbjct: 66262 attttacaagggagagatt 66280
>gb|AC004474.1|AC004474 Homo sapiens chromosome Y, clone 475I1, complete sequence Length = 148280 Score = 38.2 bits (19), Expect = 4.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 aagggagagattgctgactggac 69 ||||||||||||||||| ||||| Sbjct: 36153 aagggagagattgctgaatggac 36131
>emb|AL805953.5| Mouse DNA sequence from clone RP23-189N21 on chromosome 2, complete sequence Length = 173345 Score = 38.2 bits (19), Expect = 4.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 aatttagagggaacatttt 44 ||||||||||||||||||| Sbjct: 165697 aatttagagggaacatttt 165715 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,315,448 Number of Sequences: 3902068 Number of extensions: 1315448 Number of successful extensions: 98257 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98051 Number of HSP's gapped (non-prelim): 206 length of query: 93 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 72 effective length of database: 17,151,101,840 effective search space: 1234879332480 effective search space used: 1234879332480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)