>DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-)|
          Length = 1097

 Score = 84.7 bits (208), Expect = 5e-17
 Identities = 35/45 (77%), Positives = 40/45 (88%)
 Frame = -1

Query: 410  VKTVHLNGKPRVLTLKQDLHYWPTWELTFEPETDTWKRRTIKALQ 276
            ++TVHLNGKPRVLTLKQDLHYWPTWEL F+PET  W+R  +KALQ
Sbjct: 1053 IRTVHLNGKPRVLTLKQDLHYWPTWELRFDPETALWRRNILKALQ 1097

>CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 401

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 88  QLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMLG 213
           +L  G+EI +S++E H  L+P   LAHR   H  V  L   G
Sbjct: 106 RLEAGDEIAISALEHHANLLPWQQLAHRRNLHLVVLPLDAHG 147

>DAPF_BRUSU (Q8FYF0) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)|
          Length = 303

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -1

Query: 404 TVHLNGKPRVLTLKQDLHYWPT----WEL--TFEPETDTWKRRT 291
           TV++ G P ++  + D H   T    WE   TF+P T  W R T
Sbjct: 246 TVNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDT 289

>DAPF_BRUME (Q8YJF0) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)|
          Length = 303

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -1

Query: 404 TVHLNGKPRVLTLKQDLHYWPT----WEL--TFEPETDTWKRRT 291
           TV++ G P ++  + D H   T    WE   TF+P T  W R T
Sbjct: 246 TVNVPGGPLLIEWRDDDHVMMTGPAEWEFSGTFDPATGEWSRDT 289

>CUT9_SCHPO (P41889) 20S cyclosome/APC complex protein cut9 (Cell untimely torn|
           protein 9)
          Length = 671

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 34  YRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYI--LVPTLTLAHRH 174
           YR +K+Y+   +  +  + LST +  + ++I L Y+   +P L + H H
Sbjct: 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574

>RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 277 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 194
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113

>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 277 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 194
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113

>CSD_STAES (Q8CTA4) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 413

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +1

Query: 91  LSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMLGLPKEGPLKISQQGRINQAT 270
           +S G+EI+++ +E H  +VP   LA R     +   L  + + K+G L++       +AT
Sbjct: 113 ISEGDEIVVTEMEHHANIVPWQQLAKR-----KNATLKFIPMTKDGELQLDD----IKAT 163

Query: 271 VGCNAFIVLLFH 306
           +     IV + H
Sbjct: 164 INDKTKIVAIAH 175

>CSD_STAEQ (Q5HQQ0) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 413

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +1

Query: 91  LSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMLGLPKEGPLKISQQGRINQAT 270
           +S G+EI+++ +E H  +VP   LA R     +   L  + + K+G L++       +AT
Sbjct: 113 ISEGDEIVVTEMEHHANIVPWQQLAKR-----KNATLKFIPMTKDGELQLDD----IKAT 163

Query: 271 VGCNAFIVLLFH 306
           +     IV + H
Sbjct: 164 INDKTKIVAIAH 175

>MYBF_ARATH (Q700D9) Putative Myb family transcription factor At1g14600|
          Length = 255

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 82  AVQLSTGNEILMSSIELHYILVPTLTLAH--RHRQHFRVPRLSMLGLPKEGPLKISQQGR 255
           AV L  G       + L  + V  LT++H   H Q +R  R+++LG P+E     S++ R
Sbjct: 39  AVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKPEESSSPSSRRRR 98

>RCNA_ECO57 (Q8X3U5) Nickel/cobalt efflux system rcnA|
          Length = 283

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 277 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 194
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,102,344
Number of Sequences: 219361
Number of extensions: 1149245
Number of successful extensions: 2790
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2790
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)