ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl17b05 |
|---|---|
| Clone Library Name | barley_pub |
>EFTS_PROMP (Q7TUA9) Elongation factor Ts (EF-Ts)| Length = 218 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+ A +GENIKVRRF RYTLGE Sbjct: 177 KQAAAKIGENIKVRRFTRYTLGE 199
>EFTS_GUITH (O78481) Elongation factor Ts (EF-Ts)| Length = 219 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 KE IA LGENI++RRF R+TLGE Sbjct: 178 KENIAKLGENIQIRRFERFTLGE 200
>EFTS_SYNY3 (P74070) Elongation factor Ts (EF-Ts)| Length = 217 Score = 37.4 bits (85), Expect = 0.010 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+ IA LGENI+VRRF+R+ LGE Sbjct: 176 KQAIAELGENIQVRRFIRFNLGE 198
>EFTS_PROMM (Q7TV13) Elongation factor Ts (EF-Ts)| Length = 218 Score = 37.0 bits (84), Expect = 0.013 Identities = 16/23 (69%), Positives = 18/23 (78%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+ +GENIKVRRF RYTLGE Sbjct: 177 KQVAGKIGENIKVRRFTRYTLGE 199
>EFTS_SYNPX (Q7U794) Elongation factor Ts (EF-Ts)| Length = 219 Score = 37.0 bits (84), Expect = 0.013 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+T +GEN++VRRF RYTLGE Sbjct: 177 KQTAGKIGENVQVRRFTRYTLGE 199
>EFTS_SYNP6 (Q5N1Q1) Elongation factor Ts (EF-Ts)| Length = 221 Score = 36.6 bits (83), Expect = 0.017 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K++IA LGENI+VRRF R+ LGE Sbjct: 177 KQSIAELGENIQVRRFTRFVLGE 199
>EFTS_PROMA (Q7VCB5) Elongation factor Ts (EF-Ts)| Length = 217 Score = 36.6 bits (83), Expect = 0.017 Identities = 15/23 (65%), Positives = 18/23 (78%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+ +GEN+KVRRF RYTLGE Sbjct: 177 KQVAGQIGENVKVRRFTRYTLGE 199
>EFTS_SYNEL (Q8DIA3) Elongation factor Ts (EF-Ts)| Length = 297 Score = 35.8 bits (81), Expect = 0.029 Identities = 16/23 (69%), Positives = 19/23 (82%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 KE IA LGENI++RRF R+ LGE Sbjct: 177 KEHIAELGENIRIRRFQRFVLGE 199
>EFTS_GRATL (Q6B8R4) Elongation factor Ts (EF-Ts)| Length = 208 Score = 35.0 bits (79), Expect = 0.049 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+ IA LGENIKVRRF R+ LGE Sbjct: 181 KQHIALLGENIKVRRFQRFLLGE 203
>EFTS_GLOVI (Q7NJK3) Elongation factor Ts (EF-Ts)| Length = 219 Score = 34.7 bits (78), Expect = 0.064 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = -2 Query: 283 ETIAGLGENIKVRRFVRYTLGE 218 + IA +GENIKVRRF R+ LGE Sbjct: 178 QKIAKIGENIKVRRFARFVLGE 199
>EFTS_GEOSL (P61333) Elongation factor Ts (EF-Ts)| Length = 216 Score = 34.7 bits (78), Expect = 0.064 Identities = 14/22 (63%), Positives = 18/22 (81%) Frame = -2 Query: 283 ETIAGLGENIKVRRFVRYTLGE 218 ETI+ +GEN+ VRRF R+ LGE Sbjct: 176 ETISSIGENMSVRRFARFVLGE 197
>EFTS_ANTSP (Q02855) Elongation factor Ts (EF-Ts) (Fragment)| Length = 87 Score = 34.7 bits (78), Expect = 0.064 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+ I+ LGENIK+RRF R+ LGE Sbjct: 45 KQNISLLGENIKIRRFERFVLGE 67
>EFTS_PHATR (Q9TK50) Elongation factor Ts (EF-Ts)| Length = 202 Score = 34.3 bits (77), Expect = 0.084 Identities = 14/23 (60%), Positives = 19/23 (82%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+ ++ LGENI+V+RF RY LGE Sbjct: 178 KQVVSILGENIRVQRFTRYVLGE 200
>EFTS_ANASP (Q8YMY3) Elongation factor Ts (EF-Ts)| Length = 313 Score = 33.9 bits (76), Expect = 0.11 Identities = 14/21 (66%), Positives = 18/21 (85%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTL 224 K+TIA LGENI+VRRF+ + L Sbjct: 129 KQTIANLGENIQVRRFINFAL 149 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 K+ A GE ++V RFVRY LGE Sbjct: 271 KQVKAKAGEEVEVSRFVRYILGE 293
>EFTS_PORPU (P51248) Elongation factor Ts (EF-Ts)| Length = 220 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -2 Query: 283 ETIAGLGENIKVRRFVRYTLG 221 + IA LGENIK+RRFVR+ LG Sbjct: 179 QNIALLGENIKIRRFVRFILG 199
>EFTS_CYAME (Q85FR4) Elongation factor Ts (EF-Ts)| Length = 209 Score = 32.7 bits (73), Expect = 0.24 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 + TIA +GENI+++RF R+ LGE Sbjct: 175 RTTIAQVGENIRLKRFARFVLGE 197
>EFTS_SYMTH (Q67PB6) Elongation factor Ts (EF-Ts)| Length = 304 Score = 32.0 bits (71), Expect = 0.42 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 KE +A +GENI+VRRF RY + + Sbjct: 122 KEAVAKIGENIQVRRFERYEVAD 144
>EFTS_THEMA (Q9X1U1) Elongation factor Ts (EF-Ts)| Length = 199 Score = 31.6 bits (70), Expect = 0.54 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = -2 Query: 283 ETIAGLGENIKVRRFVRYTLGE 218 E IA GENI+V RF RY +GE Sbjct: 174 ELIAKTGENIRVSRFTRYEIGE 195
>EFTS_THETN (Q8RA22) Elongation factor Ts (EF-Ts)| Length = 200 Score = 30.8 bits (68), Expect = 0.93 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = -2 Query: 283 ETIAGLGENIKVRRFVRYTLGE 218 E IA LGENI +RRF R+ GE Sbjct: 175 EMIAKLGENIVIRRFARFERGE 196
>EFTS_THET8 (P43895) Elongation factor Ts (EF-Ts)| Length = 196 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLG 221 ++ IA +GENI VRRF R+ LG Sbjct: 174 QQAIAKIGENIVVRRFCRFELG 195
>EFTS_THET2 (Q72KD8) Elongation factor Ts (EF-Ts)| Length = 196 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLG 221 ++ IA +GENI VRRF R+ LG Sbjct: 174 QQAIAKIGENIVVRRFCRFELG 195
>EFTS_LEPIN (Q8F141) Elongation factor Ts (EF-Ts)| Length = 199 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLG 221 KE IA GENI + RF+R+ +G Sbjct: 176 KEAIAKFGENITIARFIRFQVG 197
>EFTS_LEPIC (Q72U13) Elongation factor Ts (EF-Ts)| Length = 199 Score = 30.0 bits (66), Expect = 1.6 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLG 221 KE IA GENI + RF+R+ +G Sbjct: 176 KEAIAKFGENITIARFIRFQVG 197
>EFTS_CHRVO (Q7NVZ3) Elongation factor Ts (EF-Ts)| Length = 288 Score = 30.0 bits (66), Expect = 1.6 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRY 230 K IA LGEN+ +RRFVRY Sbjct: 126 KAAIAKLGENMTIRRFVRY 144
>SECA_SPIOL (Q36795) Preprotein translocase secA subunit, chloroplast precursor| Length = 1036 Score = 30.0 bits (66), Expect = 1.6 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Frame = -1 Query: 275 RWSGGEHQGTEVCQVYPRRKLINETVTSVTIPDIRSWAHFDS-S*CIAVASLYSVVLGSM 99 RWS G HQ E + P + NET+T +I + F A+ S S+ Sbjct: 413 RWSDGLHQAVEAKEGVP---IQNETITLASISYQNFFLQFPKLCGMTGTAATESAEFESI 469 Query: 98 YNFVSPVTIVPGSKP 54 Y VTIVP +KP Sbjct: 470 YKL--KVTIVPTNKP 482
>SECA_ARATH (Q9SYI0) Preprotein translocase secA subunit, chloroplast precursor| Length = 1021 Score = 29.6 bits (65), Expect = 2.1 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Frame = -1 Query: 275 RWSGGEHQGTEVCQVYPRRKLINETVTSVTIPDIRSWAHFDS-S*CIAVASLYSVVLGSM 99 RWS G HQ E + P + NE++T +I + F AS S S+ Sbjct: 404 RWSDGLHQAVEAKEGLP---IQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESI 460 Query: 98 YNFVSPVTIVPGSKP 54 Y VTIVP +KP Sbjct: 461 YKL--KVTIVPTNKP 473
>EFTS_DESVH (Q72DQ6) Elongation factor Ts (EF-Ts)| Length = 287 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGEN 215 K+T +G+N+ V RFVR+ LGE+ Sbjct: 256 KQTSKAVGDNLGVARFVRFQLGED 279
>RCC1_HUMAN (P18754) Regulator of chromosome condensation (Chromosome| condensation protein 1) (Cell cycle regulatory protein) Length = 421 Score = 29.3 bits (64), Expect = 2.7 Identities = 18/68 (26%), Positives = 29/68 (42%) Frame = +1 Query: 13 SLLSSTLKVCKKACGLEPGTIVTGDTKLYMEPSTTEYKLATAMHHDESKCAQLLMSGIVT 192 +L+S V ACG G VT D +++ T Y+L T D +++ + Sbjct: 339 TLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLEN 398 Query: 193 EVTVSFIS 216 V +S S Sbjct: 399 RVVLSVSS 406
>EFTS_CYACA (Q9TM32) Elongation factor Ts (EF-Ts)| Length = 208 Score = 28.9 bits (63), Expect = 3.5 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLGE 218 KE I ENI++ RF R+T+GE Sbjct: 184 KEKINKFKENIQINRFARFTIGE 206
>EFTS_DESPS (Q6AP40) Elongation factor Ts (EF-Ts)| Length = 196 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -2 Query: 283 ETIAGLGENIKVRRFVRYTLG 221 E +A +GENI ++RF R+ +G Sbjct: 175 ELVAKMGENISIKRFARFQVG 195
>SECA_PEA (Q41062) Preprotein translocase secA subunit, chloroplast precursor| Length = 1011 Score = 28.5 bits (62), Expect = 4.6 Identities = 23/74 (31%), Positives = 32/74 (43%) Frame = -1 Query: 275 RWSGGEHQGTEVCQVYPRRKLINETVTSVTIPDIRSWAHFDSS*CIAVASLYSVVLGSMY 96 RWS G HQ E + P + NETVT +I + F C + + + Sbjct: 391 RWSDGLHQAVEAKEGLP---IQNETVTLASISYQNFFLQFPKL-CGMTGTAATEITEFES 446 Query: 95 NFVSPVTIVPGSKP 54 + VTIVP +KP Sbjct: 447 IYKLKVTIVPTNKP 460
>LYS2_CANGA (Q6FMI5) L-aminoadipate-semialdehyde dehydrogenase large subunit (EC| 1.2.1.31) (Alpha-aminoadipate reductase) (Alpha-AR) Length = 1374 Score = 28.1 bits (61), Expect = 6.0 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 7/98 (7%) Frame = -1 Query: 281 DDRWSGGE-------HQGTEVCQVYPRRKLINETVTSVTIPDIRSWAHFDSS*CIAVASL 123 DD+WS H G V VYP KL N V S I + +L Sbjct: 1035 DDKWSHLSETIDIIIHNGALVHWVYPYSKLRNANVVST----------------INIMNL 1078 Query: 122 YSVVLGSMYNFVSPVTIVPGSKPHAFLHTFNVDDKRDQ 9 S ++NFVS +++ + H F + DK Q Sbjct: 1079 ASEGKPKLFNFVSSTSVLDTN------HYFELSDKLQQ 1110
>AMGO2_MOUSE (Q80ZD9) Amphoterin-induced protein 2 precursor (AMIGO-2)| (Alivin-1) Length = 519 Score = 28.1 bits (61), Expect = 6.0 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 8/70 (11%) Frame = -1 Query: 266 GGEHQGTEVCQVYPRRKLINET------VTSVTIPDIRSWAH--FDSS*CIAVASLYSVV 111 G E G C R++L+NET V++ TI RS AH F+++ A + S+V Sbjct: 353 GFEDAGVYSCIAMNRQRLLNETVDIMINVSNFTIN--RSHAHEAFNTAFTTLAACVASIV 410 Query: 110 LGSMYNFVSP 81 L +Y +++P Sbjct: 411 LVLLYLYLTP 420
>Y554_METJA (Q57974) Hypothetical protein MJ0554| Length = 152 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/67 (23%), Positives = 33/67 (49%) Frame = -1 Query: 269 SGGEHQGTEVCQVYPRRKLINETVTSVTIPDIRSWAHFDSS*CIAVASLYSVVLGSMYNF 90 +GG H+ Q+Y + KL+ E + +TI I S +A++ +++L + N Sbjct: 63 TGGVHKELTYLQIYDKYKLMCEFIREITISTITS----------ELATIATMILYQLQNP 112 Query: 89 VSPVTIV 69 + +T + Sbjct: 113 IKTITFL 119
>UXUA_SHISS (Q3YU59) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 204 LIYQFSPRVYLTNLRTLMFSPRP 272 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_SHIFL (P0A4S0) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 204 LIYQFSPRVYLTNLRTLMFSPRP 272 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_SHIBS (Q31T20) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 204 LIYQFSPRVYLTNLRTLMFSPRP 272 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_ECOLI (P24215) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 204 LIYQFSPRVYLTNLRTLMFSPRP 272 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_ECOL6 (P0A4R9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 204 LIYQFSPRVYLTNLRTLMFSPRP 272 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_ECO57 (Q8XEG9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 204 LIYQFSPRVYLTNLRTLMFSPRP 272 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>EFTS_GALSU (P35019) Elongation factor Ts (EF-Ts)| Length = 199 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRYTLG 221 K I+ ENIK+RRF +Y LG Sbjct: 177 KLKISYFNENIKIRRFTKYILG 198
>EFTS_AQUAE (O66930) Elongation factor Ts (EF-Ts)| Length = 290 Score = 27.7 bits (60), Expect = 7.8 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -2 Query: 286 KETIAGLGENIKVRRFVRY 230 KE IA +GENI++ R+ RY Sbjct: 137 KEAIAKIGENIRLSRYCRY 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,363,439 Number of Sequences: 219361 Number of extensions: 770478 Number of successful extensions: 1745 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 1727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1744 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
