>gb|AY109575.1| Zea mays CL1708_1 mRNA sequence
          Length = 2612

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 211  atcagttttcgccgagggtatacctgacaaacctccgtaccttgatgttctcccc 265
            ||||||| ||||| ||||| |||| |||||||||||| ||||| |||||||||||
Sbjct: 2362 atcagttctcgcccagggtgtaccggacaaacctccgcaccttaatgttctcccc 2308



 Score = 42.1 bits (21), Expect = 0.95
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 75   agtaacaggtgatacaaaattatacatggaaccgagt 111
            |||||||||||||||  ||||| | ||||||||||||
Sbjct: 2519 agtaacaggtgatacggaattacagatggaaccgagt 2483

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 149      atgaatcaaaatgtgcccaactcctgatgtcagg 182
                |||||||||||| |||||||||||||||||||||
Sbjct: 21699835 atgaatcaaaatatgcccaactcctgatgtcagg 21699802



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 240      aacctccgtaccttgatgttctcccccagaccagcgatcgtctccttc 287
                |||||||||||||||||||||||||| ||    |||||||||||||||
Sbjct: 21699747 aacctccgtaccttgatgttctccccaagggtggcgatcgtctccttc 21699700



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 6        atattgatctctcttgtcatctaca 30
                |||||||||||||||||||||||||
Sbjct: 21699993 atattgatctctcttgtcatctaca 21699969

>dbj|AK119540.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C06, full
            insert sequence
          Length = 1368

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 149  atgaatcaaaatgtgcccaactcctgatgtcagg 182
            |||||||||||| |||||||||||||||||||||
Sbjct: 1189 atgaatcaaaatatgcccaactcctgatgtcagg 1156



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 240  aacctccgtaccttgatgttctcccccagaccagcgatcgtctccttc 287
            |||||||||||||||||||||||||| ||    |||||||||||||||
Sbjct: 1101 aacctccgtaccttgatgttctccccaagggtggcgatcgtctccttc 1054



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 6    atattgatctctcttgtcatctaca 30
            |||||||||||||||||||||||||
Sbjct: 1347 atattgatctctcttgtcatctaca 1323

>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full
            insert sequence
          Length = 3861

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 149  atgaatcaaaatgtgcccaactcctgatgtcagg 182
            |||||||||||| |||||||||||||||||||||
Sbjct: 3682 atgaatcaaaatatgcccaactcctgatgtcagg 3649



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 240  aacctccgtaccttgatgttctcccc 265
            ||||||||||||||||||||||||||
Sbjct: 3594 aacctccgtaccttgatgttctcccc 3569



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 6    atattgatctctcttgtcatctaca 30
            |||||||||||||||||||||||||
Sbjct: 3840 atattgatctctcttgtcatctaca 3816

>dbj|AK062059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C08, full
           insert sequence
          Length = 404

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 149 atgaatcaaaatgtgcccaactcctgatgtcagg 182
           |||||||||||| |||||||||||||||||||||
Sbjct: 225 atgaatcaaaatatgcccaactcctgatgtcagg 192



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 240 aacctccgtaccttgatgttctcccccagaccagcgatcgtctccttc 287
           |||||||||||||||||||||||||| ||    |||||||||||||||
Sbjct: 137 aacctccgtaccttgatgttctccccaagggtggcgatcgtctccttc 90



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 6   atattgatctctcttgtcatctaca 30
           |||||||||||||||||||||||||
Sbjct: 383 atattgatctctcttgtcatctaca 359

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 149      atgaatcaaaatgtgcccaactcctgatgtcagg 182
                |||||||||||| |||||||||||||||||||||
Sbjct: 21628180 atgaatcaaaatatgcccaactcctgatgtcagg 21628147



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 240      aacctccgtaccttgatgttctcccccagaccagcgatcgtctccttc 287
                |||||||||||||||||||||||||| ||    |||||||||||||||
Sbjct: 21628092 aacctccgtaccttgatgttctccccaagggtggcgatcgtctccttc 21628045



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 6        atattgatctctcttgtcatctaca 30
                |||||||||||||||||||||||||
Sbjct: 21628338 atattgatctctcttgtcatctaca 21628314

>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                
Query: 149    atgaatcaaaatgtgcccaactcctgatgtcagg 182
              |||||||||||| |||||||||||||||||||||
Sbjct: 112716 atgaatcaaaatatgcccaactcctgatgtcagg 112749



 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 240    aacctccgtaccttgatgttctcccccagaccagcgatcgtctccttc 287
              |||||||||||||||||||||||||| ||    |||||||||||||||
Sbjct: 112804 aacctccgtaccttgatgttctccccaagggtggcgatcgtctccttc 112851



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 6      atattgatctctcttgtcatctaca 30
              |||||||||||||||||||||||||
Sbjct: 112558 atattgatctctcttgtcatctaca 112582

>dbj|BS000097.1| Pan troglodytes chromosome 22 clone:RP43-016D07, map 22, complete
              sequences
          Length = 184809

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 147    tgatgaatcaaaatgtgcccaac 169
              |||||||||||||||||||||||
Sbjct: 133851 tgatgaatcaaaatgtgcccaac 133873

>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 123     caaactagcaacagctatgcat 144
               ||||||||||||||||||||||
Sbjct: 2205587 caaactagcaacagctatgcat 2205608

>gb|AC104514.2| Drosophila melanogaster clone BACR22L21, complete sequence
          Length = 170718

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   agtacaactgagtacaaact 128
             ||||||||||||||||||||
Sbjct: 13521 agtacaactgagtacaaact 13502

>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete sequence
          Length = 235095

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    gtgatacaaaattatacatg 102
             ||||||||||||||||||||
Sbjct: 59225 gtgatacaaaattatacatg 59206

>emb|AL732464.19| Mouse DNA sequence from clone RP23-453F10 on chromosome 4, complete
              sequence
          Length = 192919

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    atgatgaatcaaaatgtgcc 165
              ||||||||||||||||||||
Sbjct: 105574 atgatgaatcaaaatgtgcc 105593

>gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, complete sequence
          Length = 189590

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    atacaaaattatacatggaa 105
             ||||||||||||||||||||
Sbjct: 20012 atacaaaattatacatggaa 20031

>gb|AC093294.3| Homo sapiens chromosome 5 clone RP11-524C16, complete sequence
          Length = 171739

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     atacaaaattatacatggaa 105
              ||||||||||||||||||||
Sbjct: 138397 atacaaaattatacatggaa 138416

>gb|AC091500.1|AC091500 Drosophila melanogaster, chromosome 2R, region 54F-55A, BAC clone
              BACR20E20, complete sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    agtacaactgagtacaaact 128
              ||||||||||||||||||||
Sbjct: 163386 agtacaactgagtacaaact 163367

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      ggtttggaaccaggaacgat 74
               ||||||||||||||||||||
Sbjct: 6355298 ggtttggaaccaggaacgat 6355279

>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     ggtttggaaccaggaacgat 74
              ||||||||||||||||||||
Sbjct: 126364 ggtttggaaccaggaacgat 126345

>emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, complete sequence
          Length = 283185

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    acaaactagcaacagctatg 141
              ||||||||||||||||||||
Sbjct: 181005 acaaactagcaacagctatg 181024

>emb|BX088551.7| Zebrafish DNA sequence from clone CH211-106A19 in linkage group 5,
             complete sequence
          Length = 184417

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   acaaactagcaacagctatg 141
             ||||||||||||||||||||
Sbjct: 69372 acaaactagcaacagctatg 69353

>gb|AC153868.3| Mus musculus BAC RP23-384D16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 211603

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 238    caaacctccgtaccttgatgttct 261
              ||||||||| ||||||||||||||
Sbjct: 188425 caaacctccctaccttgatgttct 188402

>gb|AC153578.4| Mus musculus 6 BAC RP23-218P2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228417

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 238    caaacctccgtaccttgatgttct 261
              ||||||||| ||||||||||||||
Sbjct: 109844 caaacctccctaccttgatgttct 109821

>gb|U50042.1|DDU50042 Dictyostelium discoideum repE homolog of UV-damaged DNA binding
           protein (repE) gene, complete cds
          Length = 4122

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 78  aacaggtgatacaaaattatacat 101
           ||||| ||||||||||||||||||
Sbjct: 373 aacagttgatacaaaattatacat 350

>gb|AE003801.4| Drosophila melanogaster chromosome 2R, section 49 of 73 of the complete
             sequence
          Length = 254899

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   agtacaactgagtacaaact 128
             ||||||||||||||||||||
Sbjct: 90643 agtacaactgagtacaaact 90624

>gb|AC004640.1|AC004640 Drosophila melanogaster DNA sequence (P1s DS07528 (D169) and DS06665
             (D220)), complete sequence
          Length = 79248

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   agtacaactgagtacaaact 128
             ||||||||||||||||||||
Sbjct: 67887 agtacaactgagtacaaact 67868

>gb|AC122284.5| Mus musculus BAC clone RP23-246A5 from 6, complete sequence
          Length = 189521

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 238    caaacctccgtaccttgatgttct 261
              ||||||||| ||||||||||||||
Sbjct: 160269 caaacctccctaccttgatgttct 160292

>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence
          Length = 192261

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    gtgatacaaaattatacatg 102
             ||||||||||||||||||||
Sbjct: 66679 gtgatacaaaattatacatg 66698

>emb|AL806516.4| Mouse DNA sequence from clone RP23-453N20 on chromosome X, complete
             sequence
          Length = 179534

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   caactgagtacaaactagca 132
             ||||||||||||||||||||
Sbjct: 79655 caactgagtacaaactagca 79674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,305,361
Number of Sequences: 3902068
Number of extensions: 2305361
Number of successful extensions: 42347
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42243
Number of HSP's gapped (non-prelim): 99
length of query: 287
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 265
effective length of database: 17,147,199,772
effective search space: 4544007939580
effective search space used: 4544007939580
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)