ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl17b04 |
|---|---|
| Clone Library Name | barley_pub |
>S6A20_HUMAN (Q9NP91) Sodium- and chloride-dependent transporter XTRP3 (Solute| carrier family 6 member 20) (Neurotransmitter transporter rB21A homolog) Length = 592 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -2 Query: 299 YQWSVGVASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYS 174 Y VGVAS+++ + LS+Y I W HS + P+ +S Sbjct: 83 YLSGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLPWS 124
>S6A20_MOUSE (O88575) Sodium- and chloride-dependent transporter XTRP3 (Solute| carrier family 6 member 20) Length = 635 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = -2 Query: 299 YQWSVGVASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYS 174 Y VG+AS+++ ++ S+Y I LW HS + P+ +S Sbjct: 126 YLSGVGIASLVVSFLASVYFNVINTWALWYLFHSFQDPLPWS 167
>S6A20_RAT (Q64093) Sodium- and chloride-dependent transporter XTRP3 (Solute| carrier family 6 member 20) (Neurotransmitter transporter rB21A) Length = 616 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -2 Query: 299 YQWSVGVASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYS 174 Y VGVAS+++ + LS+Y I W HS + P+ +S Sbjct: 107 YLSGVGVASVVVSFFLSMYYNVINAWGFWYLFHSFQDPLPWS 148
>NU4M_RHISA (O99825) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 433 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%) Frame = -2 Query: 272 MLMVWVLSLYLASIACIELWSYGHSLKGPIAYSSIMHKG--LAGIVT 138 ++++ + L SI C+ Y + +K IAYSS+ H G LAG VT Sbjct: 238 LIVISMWGAVLISIFCL----YQNDIKSLIAYSSVSHMGITLAGCVT 280
>S6A19_MOUSE (Q9D687) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = -2 Query: 320 SFHCCLRYQWSVGVASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYS 174 S H L+ +G+ASM + +++ LY +I +W + +S + P+ +S Sbjct: 106 SIHPALK---GIGIASMFVSFMVGLYYNTIIAWVMWYFFNSFQEPLPWS 151
>MUTS_SYMTH (Q67NK1) DNA mismatch repair protein mutS| Length = 875 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -2 Query: 242 LASIACIELWSYGHSLKGPIAYSSIMHKGLAGIVTGLFLYYSG 114 L+ C +L + +AY MHK G V+GL +YY G Sbjct: 227 LSGFGCEDLELATSAAGAALAYLEEMHKASLGHVSGLAVYYPG 269
>COX3_CANGA (Q85Q96) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) (Cytochrome oxidase subunit 3) Length = 269 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 7/74 (9%) Frame = -1 Query: 366 GLSWPPANFSKKGIQELPLLPALPMVRRRGIHAYGLGALALPCIHCMHRT-------LVI 208 G SWPP ELPLL + ++ Y AL C +R + I Sbjct: 121 GASWPPVGIQAVQPTELPLLNTIILLSSGATITYSHHALI-----CRNRNKALSGLFITI 175 Query: 207 WSLIKRPDCLFIHY 166 W +I C +I Y Sbjct: 176 WLIIIFVTCQYIEY 189
>PHAAB_RHIME (Q52978) Probable K(+)/H(+) antiporter subunit A/B (pH adaptation| potassium efflux system protein A/B) (Pha system subunit A/B) Length = 999 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = -2 Query: 293 WSVGVASMLMVWVLSLYLASIACIELWSY----GHSLKGPIAYSSIMHKGLAGIVTGL 132 W V + W++ L A + + L +Y LKG +AYS+I H GL ++ L Sbjct: 290 WPVMAGTEAWFWIVGL--AGLTTLLLGAYFAIFQQDLKGLLAYSTISHLGLITVLLSL 345
>AXE2_PENPU (O59893) Acetylxylan esterase 2 precursor (EC 3.1.1.72) (AXE II)| Length = 234 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Frame = -2 Query: 284 GVASMLMVWVLSLYLASIACIELWSY----GHSLKGPIAYSSIMHKGLAGIVTGLFLYYS 117 G +S ++ VLS Y S A E +Y G S G +YSS + +G+A + + + + S Sbjct: 47 GSSSTVVNGVLSAYPGSTA--EAINYPACGGQSSCGGASYSSSVAQGIAAVASAVNSFNS 104 Query: 116 GCPTS 102 CP++ Sbjct: 105 QCPST 109
>NLTP6_AMBAR (O04004) Nonspecific lipid-transfer protein precursor (LTP) (Pollen| allergen Amb a 6) (Amb a VI) (Allergen Ra6) Length = 118 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -2 Query: 308 CLRYQWSVGVASMLMVWVLSLYLASIAC 225 C+R WSV V +L+ W +++ AS C Sbjct: 3 CIRILWSVAVGLLLVSWRPTMFAASPTC 30
>DIP2A_MOUSE (Q8BWT5) Disco-interacting protein 2 homolog A| Length = 1523 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 325 PGASIVACVTNGPSAWHPCLWSGCSRFTLHPLHASNFG 212 PG ++A A++ CL+ GC T+ P H N G Sbjct: 1003 PGVDLIA-------AFYGCLYCGCVPVTVRPPHPQNLG 1033
>DIP2A_HUMAN (Q14689) Disco-interacting protein 2 homolog A| Length = 1571 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 325 PGASIVACVTNGPSAWHPCLWSGCSRFTLHPLHASNFG 212 PG ++A A++ CL+ GC T+ P H N G Sbjct: 1051 PGVDLIA-------AFYGCLYCGCVPVTVRPPHPQNLG 1081
>MIAA_SHIFL (P59197) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 316 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = -2 Query: 335 KRESRSFHCCLRYQWSVGVASMLMVWVLSLYLASIACI---ELWSYGHSLKGPIAYSSIM 165 +R + FH L + V ++ L L SI C+ ++WSY L+G I+Y ++ Sbjct: 212 QRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSY---LEGEISYDEMV 268 Query: 164 HKGL 153 ++G+ Sbjct: 269 YRGV 272
>MIAA_ECOLI (P16384) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 316 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = -2 Query: 335 KRESRSFHCCLRYQWSVGVASMLMVWVLSLYLASIACI---ELWSYGHSLKGPIAYSSIM 165 +R + FH L + V ++ L L SI C+ ++WSY L+G I+Y ++ Sbjct: 212 QRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSY---LEGEISYDEMV 268 Query: 164 HKGL 153 ++G+ Sbjct: 269 YRGV 272
>MIAA_ECOL6 (Q8CXV3) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 316 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = -2 Query: 335 KRESRSFHCCLRYQWSVGVASMLMVWVLSLYLASIACI---ELWSYGHSLKGPIAYSSIM 165 +R + FH L + V ++ L L SI C+ ++WSY L+G I+Y ++ Sbjct: 212 QRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSY---LEGEISYDEMV 268 Query: 164 HKGL 153 ++G+ Sbjct: 269 YRGV 272
>YETK_BACSU (O31540) Hypothetical transport protein yetK| Length = 330 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = -2 Query: 248 LYLASIACIELWSYGHSLKGPIAYSSIMHKGLAGIVTGLFLYYSGCPTSPCG 93 L+ A E S+ +S+ + +S +++ L V +L+YSG P G Sbjct: 218 LFFLPFALFEASSFDYSVPTVLDWSYVLYYALFVTVLAFYLWYSGVTKVPAG 269
>CYOA_BUCAI (P57544) Ubiquinol oxidase subunit 2 precursor (EC 1.10.3.-)| (Ubiquinol oxidase polypeptide II) (Cytochrome o subunit 2) (Oxidase BO(3) subunit 2) (Cytochrome o ubiquinol oxidase subunit 2) Length = 296 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = -2 Query: 341 SLKRESRSFHCCLRYQWSVGVASMLMVWVLSLYLASIACIELWSYGHSL 195 SLK S + + + W ++VW + + + S WSY H L Sbjct: 57 SLKYRSTNVNQIYKPNWCDSKKIEIVVWTIPIIIVSFLAFLSWSYTHKL 105
>PCAK_ACIAD (Q43975) 4-hydroxybenzoate transporter| Length = 457 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Frame = -2 Query: 302 RYQWSVGVASMLMVWVLSLYLASI-----ACIELWSYGHSLKGPIAYSSIMHKGLAGIVT 138 RYQW + + L+V+V + A++ A + W S GP +M L G++ Sbjct: 32 RYQWLIAIVCFLIVFVDGIDTAAMGFIAPALAQDWGVDRSQLGP-----VMSAALGGMII 86 Query: 137 G 135 G Sbjct: 87 G 87
>NQO14_PARDE (P29926) NADH-quinone oxidoreductase chain 14 (EC 1.6.99.5) (NADH| dehydrogenase I, chain 14) (NDH-1, chain 14) Length = 499 Score = 27.7 bits (60), Expect = 7.1 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -2 Query: 293 WSVGVASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYSSIMHKG--LAGIVTG 135 WS VA++ V+S++L SIA I + +K +AYSSI H G L G+ G Sbjct: 269 WSQIVAALA---VMSMFLGSIAGIGQTN----IKRLMAYSSIAHMGFALVGLAAG 316
>GPRX_ORYLA (Q91178) Probable G-protein coupled receptor (Fragment)| Length = 428 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Frame = -2 Query: 281 VASMLMVWVLSLYLASIACIELWSYGHSLKGPIAYSSI--MHKGLAGIVTGLF 129 + ML++W SL LA + YGH ++ S+ H L G+ LF Sbjct: 164 IGVMLLIWFKSLLLALVTLFGWPPYGHQSSIAASHCSLHASHSRLRGVFAVLF 216
>CAC1F_HUMAN (O60840) Voltage-dependent L-type calcium channel alpha-1F subunit| (Voltage-gated calcium channel alpha subunit Cav1.4) Length = 1966 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/59 (33%), Positives = 25/59 (42%) Frame = -1 Query: 351 PANFSKKGIQELPLLPALPMVRRRGIHAYGLGALALPCIHCMHRTLVIWSLIKRPDCLF 175 PAN + G E L P P V A GLG H H+T+ + S + P LF Sbjct: 16 PANGAGPG-PEWGLCPGPPAVEGESSGASGLGTPKRRNQHSKHKTVAVASAQRSPRALF 73
>NSMA2_HUMAN (Q9NY59) Sphingomyelin phosphodiesterase 3 (EC 3.1.4.12) (Neutral| sphingomyelinase 2) (Neutral sphingomyelinase II) (nSMase2) (nSMase-2) Length = 655 Score = 27.3 bits (59), Expect = 9.3 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = -2 Query: 335 KRESRSFHCCLRYQWSVGVASM-LMVWVLSLYLASIACIELWSYGHSLKGPIAYSSIMHK 159 KR+ CCL+ + + L + V SL A + + WS S + P YS + K Sbjct: 45 KRQRADDPCCLQLLCTALFTPIYLALLVASLPFAFLGFL-FWSPLQSARRPYIYSRLEDK 103 Query: 158 GLAG 147 GLAG Sbjct: 104 GLAG 107
>LEU2_AZOSE (Q5P1J8) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 469 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 7/29 (24%) Frame = +1 Query: 280 TPTDHW*R-------RQQWKLLDSLFREV 345 TPTDHW R RQQ + LD+ REV Sbjct: 66 TPTDHWERGILDPVSRQQVETLDANIREV 94
>MIAA_ECO57 (Q8XDN3) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 316 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = -2 Query: 335 KRESRSFHCCLRYQWSVGVASMLMVWVLSLYLASIACI---ELWSYGHSLKGPIAYSSIM 165 +R + FH L + V ++ L L SI C+ ++WSY L G I+Y ++ Sbjct: 212 QRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSY---LGGEISYDEMV 268 Query: 164 HKGL 153 ++G+ Sbjct: 269 YRGV 272 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,483,875 Number of Sequences: 219361 Number of extensions: 1151852 Number of successful extensions: 2888 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2885 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
