ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEL18_LYCES (P24396) Probable pectate lyase P18 precursor (EC 4.... 28 4.6
2MCR_RAT (P22199) Mineralocorticoid receptor (MR) 28 7.9

>PEL18_LYCES (P24396) Probable pectate lyase P18 precursor (EC 4.2.2.2) (Style|
           development-specific protein 9612)
          Length = 404

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 172 NLICRAMSAHQC----GGNFRENPNSSPILFIDEQDVAVIFFGASFTVRLC 32
           N+I   ++ H C     GN R++PN S    + + D   IF G +  V  C
Sbjct: 167 NIIIHGINIHDCKQSGNGNIRDSPNHSGWWDVSDGDGISIFGGKNIWVDHC 217



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>MCR_RAT (P22199) Mineralocorticoid receptor (MR)|
          Length = 981

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 217 AKQTCSCPFLVPFLCNLICRAMSAHQCGG-NFRENPNSSPILFID 86
           +K + S PF VP     I +  S H C G +F+ NP  +P  F+D
Sbjct: 416 SKISPSSPFSVP-----IKQESSKHSCSGASFKGNPTVNPFPFMD 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,465,413
Number of Sequences: 219361
Number of extensions: 770139
Number of successful extensions: 1752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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