ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC147179.15| Medicago truncatula clone mth2-142n19, complete ... 42 0.93
2gb|AY013285.1| Meloidogyne artiellia chitin synthase gene, compl... 42 0.93
3gb|AY873792.1| Popillia japonica iridescent virus ribonucleoside... 42 0.93
4gb|AY873791.1| Iridovirus IV31 ribonucleoside-diphosphate reduct... 42 0.93
5dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast ... 42 0.93
6emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chro... 40 3.7
7gb|AC007493.7| Homo sapiens chromosome 16 clone RP11-21B23, comp... 40 3.7
8gb|AC105225.5| Homo sapiens chromosome 8, clone RP11-775E18, com... 40 3.7
9gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, co... 40 3.7
10gb|AC015599.5|AC015599 Homo sapiens chromosome , clone RP11-45B1... 40 3.7
11gb|AC135075.5| Homo sapiens chromosome 8, clone RP11-557G24, com... 40 3.7
12dbj|AB232499.1| Cunninghamia lanceolata chloroplast chlL, chlN g... 40 3.7
13emb|AL450399.16| Mouse DNA sequence from clone RP23-286I5 on chr... 40 3.7

>gb|AC147179.15| Medicago truncatula clone mth2-142n19, complete sequence
          Length = 113361

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   aaactcaagggttgcatgtca 275
             |||||||||||||||||||||
Sbjct: 53048 aaactcaagggttgcatgtca 53068



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>gb|AY013285.1| Meloidogyne artiellia chitin synthase gene, complete cds
          Length = 11155

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 173   gcagaggaagggaacaagaaa 193
             |||||||||||||||||||||
Sbjct: 10531 gcagaggaagggaacaagaaa 10551



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>gb|AY873792.1| Popillia japonica iridescent virus ribonucleoside-diphosphate
           reductase large chain gene, partial cds
          Length = 677

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  tgaaagatgcaccaaagaaaa 66
           |||||||||||||||||||||
Sbjct: 225 tgaaagatgcaccaaagaaaa 245



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>gb|AY873791.1| Iridovirus IV31 ribonucleoside-diphosphate reductase large chain
           gene, partial cds
          Length = 595

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 46  tgaaagatgcaccaaagaaaa 66
           |||||||||||||||||||||
Sbjct: 156 tgaaagatgcaccaaagaaaa 176



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>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome
          Length = 122890

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 219    tgttcatgaaatcggtattccatat 243
              |||| ||||||||||||||||||||
Sbjct: 111225 tgtttatgaaatcggtattccatat 111201



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>emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chromosome 1p32.1-33
             Contains the 3' ends of genes FLJ34719 and KIAA0191,
             complete sequence
          Length = 127006

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    caaagaaaataacagcaaca 77
             ||||||||||||||||||||
Sbjct: 23605 caaagaaaataacagcaaca 23624



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>gb|AC007493.7| Homo sapiens chromosome 16 clone RP11-21B23, complete sequence
          Length = 155461

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 59     aaagaaaataacagcaacatcttg 82
              |||||||| |||||||||||||||
Sbjct: 123532 aaagaaaaaaacagcaacatcttg 123509



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>gb|AC105225.5| Homo sapiens chromosome 8, clone RP11-775E18, complete sequence
          Length = 135609

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    accaaagaaaataacagcaa 75
             ||||||||||||||||||||
Sbjct: 30224 accaaagaaaataacagcaa 30205



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>gb|AC084702.4| Homo sapiens chromosome 18, clone RP11-1133K3, complete sequence
          Length = 141820

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    agaaaataacagcaacatct 80
             ||||||||||||||||||||
Sbjct: 84404 agaaaataacagcaacatct 84423



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>gb|AC015599.5|AC015599 Homo sapiens chromosome , clone RP11-45B19, complete sequence
          Length = 162607

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    accaaagaaaataacagcaa 75
             ||||||||||||||||||||
Sbjct: 10133 accaaagaaaataacagcaa 10114



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>gb|AC135075.5| Homo sapiens chromosome 8, clone RP11-557G24, complete sequence
          Length = 72016

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    accaaagaaaataacagcaa 75
             ||||||||||||||||||||
Sbjct: 42631 accaaagaaaataacagcaa 42612



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>dbj|AB232499.1| Cunninghamia lanceolata chloroplast chlL, chlN genes for
            light-independent protochlorophyllide oxidoreductase
            subunitL, light-independent protochlorophyllide
            oxidoreductase subunitN, complete and partial cds
          Length = 2454

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 220  gttcatgaaatcggtattccatat 243
            ||||||||||| ||||||||||||
Sbjct: 2303 gttcatgaaattggtattccatat 2326



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>emb|AL450399.16| Mouse DNA sequence from clone RP23-286I5 on chromosome X, complete
              sequence
          Length = 207922

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     caaagaaaataacagcaaca 77
              ||||||||||||||||||||
Sbjct: 114258 caaagaaaataacagcaaca 114277


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,922,427
Number of Sequences: 3902068
Number of extensions: 2922427
Number of successful extensions: 54828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54808
Number of HSP's gapped (non-prelim): 20
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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