ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl17a12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 281 tgcacctcgtcggagacgttggcgagggcctggatcagccgcacgatgtc 330 |||| |||||| ||||| ||||||||| |||||||||||| ||| ||||| Sbjct: 13824193 tgcatctcgtcagagacattggcgaggccctggatcagcctcacaatgtc 13824144
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 281 tgcacctcgtcggagacgttggcgagggcctggatcagccgcacgatgtc 330 |||| |||||| ||||| ||||||||| |||||||||||| ||| ||||| Sbjct: 73677 tgcatctcgtcagagacattggcgaggccctggatcagcctcacaatgtc 73628
>dbj|AK105382.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B06, full insert sequence Length = 4111 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 281 tgcacctcgtcggagacgttggcgagggcctggatcagccgcacgatgtc 330 |||| |||||| ||||| ||||||||| |||||||||||| ||| ||||| Sbjct: 3298 tgcatctcgtcagagacattggcgaggccctggatcagcctcacaatgtc 3249
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Plus Query: 226 cctgtcgtcggtgctggtgccgg 248 ||||||||||||||||||||||| Sbjct: 422515 cctgtcgtcggtgctggtgccgg 422537
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Plus Query: 226 cctgtcgtcggtgctggtgccgg 248 ||||||||||||||||||||||| Sbjct: 2034191 cctgtcgtcggtgctggtgccgg 2034213
>gb|AY109478.1| Zea mays CL14216_1 mRNA sequence Length = 1151 Score = 46.1 bits (23), Expect = 0.072 Identities = 38/43 (88%) Strand = Plus / Plus Query: 293 gagacgttggcgagggcctggatcagccgcacgatgtccgcgg 335 |||||| |||||||| |||||| || |||||||||||||||| Sbjct: 795 gagacgctggcgaggccctggacgaggcgcacgatgtccgcgg 837
>ref|XM_635697.1| Dictyostelium discoideum hypothetical protein (DDB0203979), partial mRNA Length = 1518 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 69 accactactactactaatacta 90 |||||||||||||||||||||| Sbjct: 1302 accactactactactaatacta 1281
>gb|AF167066.1| Crematogaster smithi microsatellites C20-1 and C20-2 sequence Length = 244 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 46 caccaccacgacaacgacgacc 67 |||||||||||||||||||||| Sbjct: 140 caccaccacgacaacgacgacc 161
>gb|AC131154.2| Homo sapiens 3 BAC RP13-489G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189348 Score = 44.1 bits (22), Expect = 0.29 Identities = 37/41 (90%), Gaps = 2/41 (4%) Strand = Plus / Minus Query: 53 acgacaacgacgac--cgaccactactactactaatactaa 91 |||||||||||||| |||| ||||||||||||| |||||| Sbjct: 172535 acgacaacgacgacgacgacgactactactactactactaa 172495
>ref|XM_688458.1| PREDICTED: Danio rerio similar to Ribosomal protein S6 kinase, polypeptide 5 (LOC565173), mRNA Length = 2637 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 ctgtgctggtgctggtcttctt 198 |||||||||||||||||||||| Sbjct: 2449 ctgtgctggtgctggtcttctt 2428
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 289 gtcggagacgttggcgagggcctgga 314 ||||||| |||||||||||||||||| Sbjct: 2353485 gtcggaggcgttggcgagggcctgga 2353510
>emb|BX537330.9| Zebrafish DNA sequence from clone DKEYP-104A11 in linkage group 17, complete sequence Length = 99858 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 ctgtgctggtgctggtcttctt 198 |||||||||||||||||||||| Sbjct: 85805 ctgtgctggtgctggtcttctt 85826
>ref|NM_124213.3| Arabidopsis thaliana ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT5G48380 mRNA, complete cds Length = 2706 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 caccaccacgacaacgacgac 66 ||||||||||||||||||||| Sbjct: 199 caccaccacgacaacgacgac 219
>ref|XM_806542.1| Trypanosoma cruzi strain CL Brener mucin TcMUCII (Tc00.1047053508441.94) partial mRNA Length = 387 Score = 42.1 bits (21), Expect = 1.1 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 46 caccaccacgacaacgacgaccgaccactactactactaatacta 90 |||||||||||| || |||||| ||||| |||||||||| ||||| Sbjct: 96 caccaccacgactacaacgacc-accacgactactactactacta 139
>gb|AF083807.1| Arabidopsis thaliana clone sps952 unknown mRNA Length = 2277 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 caccaccacgacaacgacgac 66 ||||||||||||||||||||| Sbjct: 70 caccaccacgacaacgacgac 90
>emb|CR407590.7| Zebrafish DNA sequence from clone CH211-153N15 in linkage group 2, complete sequence Length = 176623 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaaa 92 ||||||||||||||||||||| Sbjct: 26754 actactactactaatactaaa 26734
>gb|AY060464.1| Drosophila melanogaster SD04616 full insert cDNA Length = 4295 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 caacaccaccacgacaacgacgacc 67 ||||||||||||||| ||||||||| Sbjct: 2935 caacaccaccacgacgacgacgacc 2959
>gb|DQ279973.1| Cocculina sp. GG-2005 28S ribosomal RNA gene, partial sequence Length = 2157 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 tcggagacgttggcgagggcc 310 ||||||||||||||||||||| Sbjct: 1950 tcggagacgttggcgagggcc 1970
>emb|Z35836.1|SCYBL075C S.cerevisiae chromosome II reading frame ORF YBL075c Length = 2463 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 cggtgctggtgccggcgcagg 254 ||||||||||||||||||||| Sbjct: 361 cggtgctggtgccggcgcagg 341
>emb|Z26879.1|SCRPS8SFC S.cerevisiae genes for small subunit ribosomal protein S8, splicing factor, and chaperone Length = 7468 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 cggtgctggtgccggcgcagg 254 ||||||||||||||||||||| Sbjct: 58 cggtgctggtgccggcgcagg 38
>gb|AY074386.1| Arabidopsis thaliana putative receptor protein kinase (At5g48380) mRNA, complete cds Length = 2404 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 caccaccacgacaacgacgac 66 ||||||||||||||||||||| Sbjct: 85 caccaccacgacaacgacgac 105
>emb|X07886.1|SCILSI Yeats ILSI gene for isoleucyl-tRNA synthetase (EC 6.1.1.5) Length = 3848 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 cggtgctggtgccggcgcagg 254 ||||||||||||||||||||| Sbjct: 33 cggtgctggtgccggcgcagg 53
>gb|AF367312.1| Arabidopsis thaliana AT5g48380/MJE7_1 mRNA, complete cds Length = 2298 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 caccaccacgacaacgacgac 66 ||||||||||||||||||||| Sbjct: 97 caccaccacgacaacgacgac 117
>gb|AY062559.1| Arabidopsis thaliana receptor-like protein kinase (At5g48380; MJE7.1) mRNA, complete cds Length = 2211 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 caccaccacgacaacgacgac 66 ||||||||||||||||||||| Sbjct: 94 caccaccacgacaacgacgac 114
>emb|BX831030.1|CNS0A1O9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZA06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2381 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 caccaccacgacaacgacgac 66 ||||||||||||||||||||| Sbjct: 199 caccaccacgacaacgacgac 219
>emb|BX005094.3| Zebrafish DNA sequence from clone CH211-180H17 in linkage group 3, complete sequence Length = 155431 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaaa 92 ||||||||||||||||||||| Sbjct: 34417 actactactactaatactaaa 34437
>dbj|AB020745.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJE7 Length = 74298 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 caccaccacgacaacgacgac 66 ||||||||||||||||||||| Sbjct: 2230 caccaccacgacaacgacgac 2210
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 276 cgccctgcacctcgtcggagacgtt 300 |||||||||| |||||||||||||| Sbjct: 1452908 cgccctgcacgtcgtcggagacgtt 1452884
>gb|M97225.1|YSCSSA3B S.cerevisiae heat shock protein 70 (SSA3) gene (clone pSSA3H), complete cds Length = 2141 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 cggtgctggtgccggcgcagg 254 ||||||||||||||||||||| Sbjct: 1827 cggtgctggtgccggcgcagg 1847
>ref|XM_638631.1| Dictyostelium discoideum hypothetical protein (DDB0217599), partial mRNA Length = 7866 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 accactactactactaatac 88 |||||||||||||||||||| Sbjct: 637 accactactactactaatac 656
>ref|XM_483465.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2025 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caacaacaccaccacgacaa 59 |||||||||||||||||||| Sbjct: 1756 caacaacaccaccacgacaa 1737
>ref|XM_518321.1| PREDICTED: Pan troglodytes similar to MHC class I chain-related protein B (LOC462530), mRNA Length = 1422 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 1040 actactactactaatactaa 1021
>ref|NM_192885.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1308 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 caacaacaccaccacgacaacgac 63 ||||| |||||||||||||||||| Sbjct: 114 caacaccaccaccacgacaacgac 137
>gb|AC123731.9| Mus musculus chromosome 15, clone RP23-458N23, complete sequence Length = 178222 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 100901 actactactactaatactaa 100920
>gb|AC102771.13| Mus musculus chromosome 1, clone RP23-175K23, complete sequence Length = 226416 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 accactactactactaatactaaa 92 |||||||||||||||| ||||||| Sbjct: 136357 accactactactactactactaaa 136334
>ref|XM_705455.1| Candida albicans SC5314 hypothetical protein (CaO19.5045), mRNA Length = 1629 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 589 actactactactaatactaa 608
>ref|XM_713450.1| Candida albicans SC5314 hypothetical protein (CaO19_9973), mRNA Length = 1041 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cactactactactaatacta 90 |||||||||||||||||||| Sbjct: 738 cactactactactaatacta 757
>ref|XM_713367.1| Candida albicans SC5314 hypothetical protein (CaO19_2437), mRNA Length = 1041 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cactactactactaatacta 90 |||||||||||||||||||| Sbjct: 738 cactactactactaatacta 757
>gb|DQ481664.1| Takifugu rubripes HoxAb gene cluster, complete sequence Length = 163052 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 accactactactactaatac 88 |||||||||||||||||||| Sbjct: 57109 accactactactactaatac 57090
>gb|AC146504.2| Danio rerio clone CH211-86L16, complete sequence Length = 181948 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 158658 actactactactaatactaa 158639
>gb|AY811262.1| Schistosoma japonicum SJCHGC02708 protein mRNA, partial cds Length = 987 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 501 actactactactaatactaa 520
>gb|AC158589.7| Mus musculus chromosome 5, clone RP24-388A6, complete sequence Length = 173087 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 156486 actactactactaatactaa 156467
>emb|AJ865328.1| Pholidoptera griseoaptera microsatellite DNA, clone WPG 7-11 Length = 341 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 201 actactactactaatactaa 220
>ref|XM_848351.1| PREDICTED: Canis familiaris similar to major facilitator superfamily domain containing 2 (LOC610803), mRNA Length = 1464 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 167 caggccggggctgtgctggtgctg 190 |||||| ||||||||||||||||| Sbjct: 1179 caggcctgggctgtgctggtgctg 1156
>gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence Length = 229006 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 205860 actactactactaatactaa 205879
>gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence Length = 209207 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 148296 actactactactaatactaa 148277
>emb|CR388050.16| Zebrafish DNA sequence from clone CH211-287N14 in linkage group 24, complete sequence Length = 176933 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 124833 actactactactaatactaa 124814
>emb|CR627494.10| Zebrafish DNA sequence from clone CH211-48C9 in linkage group 17, complete sequence Length = 121177 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 73975 actactactactaatactaa 73994
>emb|BX942846.7| Zebrafish DNA sequence from clone CH211-265O15 in linkage group 6, complete sequence Length = 153508 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 actactactactaatactaaagca 95 ||||||||||||| |||||||||| Sbjct: 105753 actactactactactactaaagca 105776
>gb|AC140248.3| Mus musculus BAC clone RP24-285L8 from chromosome 7, complete sequence Length = 182854 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 actactactactaatactaaagca 95 ||||||||||||| |||||||||| Sbjct: 164310 actactactactactactaaagca 164287
>gb|AC130550.4| Mus musculus BAC clone RP24-463N15 from chromosome 7, complete sequence Length = 152908 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 actactactactaatactaaagca 95 ||||||||||||| |||||||||| Sbjct: 41599 actactactactactactaaagca 41576
>ref|XM_547953.2| PREDICTED: Canis familiaris similar to ribosomal protein S6 kinase, 90kDa, polypeptide 5 isoform a (LOC490831), mRNA Length = 2421 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gtgctggtgctggtcttctt 198 |||||||||||||||||||| Sbjct: 2279 gtgctggtgctggtcttctt 2260
>emb|CR381650.15| Zebrafish DNA sequence from clone CH211-129F24 in linkage group 7, complete sequence Length = 137625 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 107646 actactactactaatactaa 107627
>ref|XM_648233.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (86.t00029) partial mRNA Length = 1131 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 970 actactactactaatactaa 989
>ref|XM_947767.1| Theileria annulata strain Ankara RAN-binding protein 1 (TA07135) partial mRNA Length = 1065 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 526 actactactactaatactaa 545
>gb|AC121523.6| Mus musculus chromosome 18, clone RP24-92N23, complete sequence Length = 202346 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 188090 actactactactaatactaa 188071
>ref|XM_660666.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20329) partial mRNA Length = 4941 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 814 actactactactaatactaa 833
>gb|AC159503.10| Mus musculus 10 BAC RP24-293I2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 199258 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 actactactactaatactaaagca 95 ||||||||||||| |||||||||| Sbjct: 166684 actactactactactactaaagca 166661
>emb|BX950192.10| Zebrafish DNA sequence from clone CH211-173E20 in linkage group 17, complete sequence Length = 135523 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 99287 actactactactaatactaa 99306
>emb|CR788305.17| Zebrafish DNA sequence from clone DKEYP-59G5 in linkage group 20, complete sequence Length = 187351 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 5723 actactactactaatactaa 5742
>emb|BX005428.7| Human DNA sequence from clone DASS-38I7 on chromosome 6, complete sequence Length = 130934 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 59118 actactactactaatactaa 59137
>emb|AL669813.6| Human DNA sequence from clone XXbac-231I11 on chromosome 6 contains the 3' end of the gene for myelin oligodendrocyte glycoprotein (MOG), a novel KRAB box-containing C2H2 type zinc finger protein (fragment), a P5-1 pseudogene, the HLA-F gene for major histocompatibility complex, class I, F (HLAF, HLA-5.4, HLA-CDA12), a 60S ribosomal protein L23A (RPL23A) pseudogene, a MHC class 1 polypeptide-related sequence B (MICB) pseudogene, a HCGIX pseudogene, a interferon-induced transmembrane protein 3 (IFITM3, 1-8U) pseudogene and four CpG islands, complete sequence Length = 115133 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 72113 actactactactaatactaa 72132
>emb|AL645939.6| Human DNA sequence from clone XXbac-170G13 on chromosome 6 contains two P5-1 pseudogenes, the HLA-F gene for major histocompatibility complex, class I, F, a ribosomal protein L23A (RPL23A) pseudogene, a MHC class 1 polypeptide-related sequence B (MICB) pseudogene, a HCGIX pseudogene, a interferon-induced transmembrane protein 3 (IFITM3) pseudogene, a HLA (MHC class 1) pseudogene, a putative novel MHC class 1 (HLA) protein, a 60S ribosomal protein L7A (RPL7A) pseudogene and five CpG islands, complete sequence Length = 123768 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 41177 actactactactaatactaa 41196
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 234 cggtgctggtgccggcgcaggcga 257 |||||| ||||||||||||||||| Sbjct: 57028 cggtgcgggtgccggcgcaggcga 57051
>gb|AE014837.1| Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence Length = 257757 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cactactactactaatacta 90 |||||||||||||||||||| Sbjct: 52736 cactactactactaatacta 52755
>gb|AC026231.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-114F4, complete sequence Length = 208199 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cgaccactactactactaatacta 90 |||||||||||||||||| ||||| Sbjct: 38123 cgaccactactactactactacta 38146
>gb|AC158153.3| Mus musculus chromosome 5, clone RP23-119B3, complete sequence Length = 196824 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 accactactactactaatactaaa 92 |||||||||||||||| ||||||| Sbjct: 64256 accactactactactactactaaa 64279
>emb|AL022723.4|HS377H14 Human DNA sequence from clone RP3-377H14 on chromosome 6p21.32-22.1 Contains the HLA-G gene for major histocompatibility complex class I G (HLA 6.0) an MHC class I pseudogene, an RPL7A (60S Ribosomal Protein L7A) pseudogene, a gene for a novel MHC class 1 protein, an interferon-inducible protein 1-8U pseudogene, an RPL23A (60S Ribosomal Protein L23A) pseudogene, an HCGIX pseudogene, an MICB or PERB11.1 pseudogene,the HLA-F gene for major histocompatibility complex class I F (CDA12), and four P5-1 pseudogenes. Contains EST, STSs, GSS and six CpG islands, complete sequence Length = 148834 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 96503 actactactactaatactaa 96484
>emb|BX927064.8| Zebrafish DNA sequence from clone DKEY-73N8 in linkage group 24, complete sequence Length = 181758 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 75503 actactactactaatactaa 75522
>emb|BX039909.1|CNS092YH Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC10BG06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 839 Score = 40.1 bits (20), Expect = 4.5 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 53 acgacaacgacgaccgaccactactactacta 84 ||||||||||||||| ||||| |||||||||| Sbjct: 423 acgacaacgacgacc-accaccactactacta 453
>gb|AC134473.4| Mus musculus BAC clone RP23-190G18 from chromosome 3, complete sequence Length = 212795 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 173745 actactactactaatactaa 173764
>emb|AL928677.6| Zebrafish DNA sequence from clone BUSM1-70B1 in linkage group 7 Contains a novel gene similar to mouse and rodent CHRNA7 (cholinergic receptor, nicotinic, alpha polypeptide 7), a novel gene and two CpG islands, complete sequence Length = 144076 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 138129 actactactactaatactaa 138148
>emb|AL772266.6| Zebrafish DNA sequence from clone CH211-147H1 in linkage group 12 Contains a novel gene similar to mouse Grid2ip (ionotropic glutamate receptor delta 2 (Grid2) interacting protein 1), a novel gene similar to zebrafish pim1, a novel gene similar to vertebrate RGS9 (regulator of G-protein signalling 9) and two CpG islands, complete sequence Length = 179911 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 37209 actactactactaatactaa 37228
>gb|AC164439.4| Mus musculus BAC clone RP23-31B24 from chromosome 3, complete sequence Length = 206717 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 148872 actactactactaatactaa 148853
>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3, complete sequence Length = 212865 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 85806 actactactactaatactaa 85825
>emb|AL806524.10| Mouse DNA sequence from clone RP23-158E10 on chromosome 4, complete sequence Length = 211513 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 accactactactactaatactaaa 92 |||||||||||||||| ||||||| Sbjct: 65744 accactactactactactactaaa 65721
>gb|AC132164.1| Drosophila pseudoobscura FOSMID DPSF1-548A11 (Children's Hospital Oakland Research Institute Drosophila pseudoobscura FOSMID Library) complete sequence Length = 42098 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 caccaccacgacaacgacga 65 |||||||||||||||||||| Sbjct: 15523 caccaccacgacaacgacga 15504
>emb|AL929198.3| Zebrafish DNA sequence from clone BUSM1-112P11 in linkage group 7, complete sequence Length = 81630 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 2950 actactactactaatactaa 2969
>emb|BX511147.12| Zebrafish DNA sequence from clone DKEYP-36E3 in linkage group 25, complete sequence Length = 150385 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cactactactactaatacta 90 |||||||||||||||||||| Sbjct: 69160 cactactactactaatacta 69179 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 27369 actactactactaatactaa 27350
>emb|CR762418.5| Zebrafish DNA sequence from clone RP71-15A9 in linkage group 19, complete sequence Length = 147881 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 44267 actactactactaatactaa 44286
>emb|CR352217.9| Zebrafish DNA sequence from clone CH211-129P13 in linkage group 15, complete sequence Length = 162948 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 cactactactactaatactaaagc 94 |||||||||||||| ||||||||| Sbjct: 30531 cactactactactactactaaagc 30554
>gb|AC118739.17| Mus musculus chromosome 1, clone RP24-173M4, complete sequence Length = 159534 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 actactactactaatactaaagca 95 ||||||||||||| |||||||||| Sbjct: 97981 actactactactactactaaagca 97958
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 95480 actactactactaatactaa 95499
>emb|BX571974.6| Zebrafish DNA sequence from clone DKEY-29P4 in linkage group 12, complete sequence Length = 267018 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 137469 actactactactaatactaa 137450
>gb|AC119741.3| Homo sapiens 3 BAC RP11-570O24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191857 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 69 accactactactactaatactaaagcacagca 100 ||||||||||||| ||||| ||||| |||||| Sbjct: 23835 accactactactaataataataaagaacagca 23866
>emb|BX936413.10| Zebrafish DNA sequence from clone CH211-48M9 in linkage group 5, complete sequence Length = 87051 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 34822 actactactactaatactaa 34803
>emb|BX511246.4| Zebrafish DNA sequence from clone DKEY-238D17 in linkage group 23, complete sequence Length = 84484 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 49905 actactactactaatactaa 49924
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 11352109 actactactactaatactaa 11352090 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 11199950 actactactactaatactaa 11199969
>emb|CR524481.5| Zebrafish DNA sequence from clone CH211-81C11 in linkage group 22, complete sequence Length = 191642 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 158588 actactactactaatactaa 158569
>gb|AC092857.17| Rattus norvegicus clone rp32-362k5, complete sequence Length = 143406 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cactactactactaatacta 90 |||||||||||||||||||| Sbjct: 94677 cactactactactaatacta 94658
>gb|AC117464.4| Homo sapiens 3 BAC RP11-412N9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154728 Score = 40.1 bits (20), Expect = 4.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 69 accactactactactaatactaaagcacagca 100 ||||||||||||| ||||| ||||| |||||| Sbjct: 151936 accactactactaataataataaagaacagca 151967
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 accactactactactaatac 88 |||||||||||||||||||| Sbjct: 829391 accactactactactaatac 829372
>gb|AC113167.2| Homo sapiens chromosome 5 clone CTC-529J12, complete sequence Length = 140187 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 43808 actactactactaatactaa 43789
>gb|AC097356.2| Homo sapiens chromosome 3 clone RP11-107K23, complete sequence Length = 147267 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 actactactactaatactaaagca 95 ||||||||||||| |||||||||| Sbjct: 56074 actactactactactactaaagca 56097
>gb|AY013583.1| Haliotis kamtschatkana clone Hka85 microsatellite sequence Length = 553 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 514 actactactactaatactaa 533
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 173 ggggctgtgctggtgctggtcttc 196 |||||||||||||||||| ||||| Sbjct: 468561 ggggctgtgctggtgctgttcttc 468584
>emb|BX511025.10| Zebrafish DNA sequence from clone DKEY-262L17 in linkage group 25, complete sequence Length = 179144 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 109917 actactactactaatactaa 109898
>emb|BX324182.13| Zebrafish DNA sequence from clone CH211-207F21 in linkage group 19, complete sequence Length = 132675 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 5029 actactactactaatactaa 5010
>gb|AC105151.8| Mus musculus chromosome 1, clone RP23-28N2, complete sequence Length = 270578 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 197596 actactactactaatactaa 197577
>emb|BX663513.13| Zebrafish DNA sequence from clone DKEY-234F12 in linkage group 15, complete sequence Length = 249413 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 112415 actactactactaatactaa 112396
>gb|AC008448.7| Homo sapiens chromosome 5 clone CTC-340N24, complete sequence Length = 156821 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 113263 actactactactaatactaa 113244
>emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, complete sequence Length = 201461 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 80117 actactactactaatactaa 80136 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 80033 actactactactaatactaa 80052
>emb|BX322566.6| Zebrafish DNA sequence from clone CH211-209B6 in linkage group 23, complete sequence Length = 203127 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 accactactactactaatac 88 |||||||||||||||||||| Sbjct: 112487 accactactactactaatac 112468
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caacaacaccaccacgacaa 59 |||||||||||||||||||| Sbjct: 26358446 caacaacaccaccacgacaa 26358427
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 caacaacaccaccacgacaacgac 63 ||||| |||||||||||||||||| Sbjct: 24978595 caacaccaccaccacgacaacgac 24978572
>gb|AC025272.6|AC025272 Homo sapiens chromosome 15 clone RP11-548M13 map 15q21.3, complete sequence Length = 170749 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 100648 actactactactaatactaa 100629
>gb|AC022655.8| Homo sapiens, clone RP11-28O3, complete sequence Length = 142630 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cgaccactactactactaatacta 90 |||||||||||||||||| ||||| Sbjct: 114283 cgaccactactactactactacta 114260
>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence Length = 413138 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 accactactactactaatac 88 |||||||||||||||||||| Sbjct: 392482 accactactactactaatac 392463
>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0006C01 Length = 153865 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 caacaacaccaccacgacaacgac 63 ||||| |||||||||||||||||| Sbjct: 51118 caacaccaccaccacgacaacgac 51095
>gb|AY205563.1| Chlamydomonas reinhardtii genomic sequence Length = 7479 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 ggagggccgccctgcacctc 288 |||||||||||||||||||| Sbjct: 3761 ggagggccgccctgcacctc 3780
>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185405 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 113441 actactactactaatactaa 113422
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 2196067 actactactactaatactaa 2196048
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 1716913 actactactactaatactaa 1716894
>emb|BX255886.7| Zebrafish DNA sequence from clone CH211-268G14, complete sequence Length = 62994 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 40512 actactactactaatactaa 40531
>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence Length = 184026 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 gacgttggcgagggcctgga 314 |||||||||||||||||||| Sbjct: 111563 gacgttggcgagggcctgga 111582
>gb|AC153911.5| Mus musculus 10 BAC RP23-182J19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219859 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 actactactactaatactaaagca 95 ||||||||||||| |||||||||| Sbjct: 99097 actactactactactactaaagca 99120
>emb|BX005045.10| Zebrafish DNA sequence from clone CH211-69C9 in linkage group 19, complete sequence Length = 161812 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cgaccactactactactaatacta 90 |||||||||||||||||| ||||| Sbjct: 37817 cgaccactactactactactacta 37840
>emb|BX511240.5| Zebrafish DNA sequence from clone CH211-113H10, complete sequence Length = 175187 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 96618 actactactactaatactaa 96637
>emb|BX511013.9| Zebrafish DNA sequence from clone DKEY-221I2 in linkage group 20, complete sequence Length = 161346 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 131788 actactactactaatactaa 131807
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1789_C07 Length = 138944 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caacaacaccaccacgacaa 59 |||||||||||||||||||| Sbjct: 7998 caacaacaccaccacgacaa 7979
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 caacaacaccaccacgacaa 59 |||||||||||||||||||| Sbjct: 88027 caacaacaccaccacgacaa 88008
>ref|XM_314264.2| Anopheles gambiae str. PEST ENSANGP00000018749 (ENSANGG00000016260), partial mRNA Length = 663 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 aacaacaacaccaccacgacaacgacga 65 |||| ||||||||||||||| ||||||| Sbjct: 77 aacaccaacaccaccacgacgacgacga 50
>ref|XM_311646.2| Anopheles gambiae str. PEST ENSANGP00000014996 (ENSANGG00000012507), partial mRNA Length = 1816 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 aacaacaacaccaccacgacaacgacga 65 |||| ||||||||||||||| ||||||| Sbjct: 81 aacaccaacaccaccacgacgacgacga 54
>emb|CR548627.7| Zebrafish DNA sequence from clone DKEYP-24A7 in linkage group 19, complete sequence Length = 146348 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 2349 actactactactaatactaa 2368
>emb|CR450733.7| Zebrafish DNA sequence from clone DKEYP-86E4 in linkage group 18, complete sequence Length = 208614 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 202563 actactactactaatactaa 202582
>emb|BX537259.24| Zebrafish DNA sequence from clone CH211-241P10 in linkage group 20, complete sequence Length = 185460 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 150872 actactactactaatactaa 150853
>emb|BX640464.10| Zebrafish DNA sequence from clone DKEY-22M8 in linkage group 19, complete sequence Length = 255824 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 213153 actactactactaatactaa 213172
>emb|CR381582.9| Zebrafish DNA sequence from clone DKEY-28M3 in linkage group 18, complete sequence Length = 215124 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 51946 actactactactaatactaa 51927
>emb|BX649350.9| Zebrafish DNA sequence from clone CH211-161F1 in linkage group 4, complete sequence Length = 115188 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 52274 actactactactaatactaa 52255
>dbj|AK063574.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G11, full insert sequence Length = 1398 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 caacaacaccaccacgacaacgac 63 ||||| |||||||||||||||||| Sbjct: 183 caacaccaccaccacgacaacgac 206
>emb|BX004834.13| Zebrafish DNA sequence from clone CH211-42E22 in linkage group 18, complete sequence Length = 188895 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 57761 actactactactaatactaa 57780
>emb|BX088695.9| Zebrafish DNA sequence from clone DKEY-18E5 in linkage group 25, complete sequence Length = 205870 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cactactactactaatacta 90 |||||||||||||||||||| Sbjct: 128307 cactactactactaatacta 128288
>emb|AL845372.6| Zebrafish DNA sequence from clone DKEYP-113C1 in linkage group 20, complete sequence Length = 80017 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 58428 actactactactaatactaa 58409
>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete sequence Length = 299633 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 230486 actactactactaatactaa 230467
>dbj|AP003061.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-100P11, complete sequence Length = 176129 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 gaccactactactactaata 87 |||||||||||||||||||| Sbjct: 89973 gaccactactactactaata 89992
>gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complete sequence Length = 188193 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 accaccacgacaacgacgac 66 |||||||||||||||||||| Sbjct: 7919 accaccacgacaacgacgac 7900
>emb|AL928980.7| Zebrafish DNA sequence from clone DKEY-77M16 in linkage group 11, complete sequence Length = 167387 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 131573 actactactactaatactaa 131592
>gb|AF217800.2| Dirofilaria immitis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 1132 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 89 actactactactaatactaa 108
>emb|BX470175.6| Zebrafish DNA sequence from clone DKEY-228K17 in linkage group 18, complete sequence Length = 122159 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 95571 actactactactaatactaa 95590
>gb|AY621480.1| Dirofilaria repens clone Dr-2 internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence Length = 560 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 78 actactactactaatactaa 97
>gb|AY621479.1| Dirofilaria repens clone Dr-1 internal transcribed spacer 1, complete sequence; and 5.8S ribosomal RNA gene, partial sequence Length = 558 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 78 actactactactaatactaa 97
>emb|AL935211.7| Zebrafish DNA sequence from clone CH211-227L1, complete sequence Length = 152485 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 77672 actactactactaatactaa 77691
>gb|AC164400.7| Mus musculus chromosome 1, clone RP23-379N20, complete sequence Length = 197648 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 113596 actactactactaatactaa 113615
>emb|AJ509399.1|AME509399 Apis mellifera microsatellite marker Am0168=AP142 Length = 253 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 190 actactactactaatactaa 171
>gb|AC004170.1|AC004170 Homo sapiens clone UWGC: y19x012 from 6p21, complete sequence Length = 39699 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 18109 actactactactaatactaa 18090
>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence Length = 180436 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 accactactactactaatactaaa 92 ||||||||||||||||||| |||| Sbjct: 177475 accactactactactaataataaa 177498
>gb|AC122464.3| Mus musculus BAC clone RP24-301O17 from 6, complete sequence Length = 168611 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 36647 actactactactaatactaa 36666
>gb|AC133599.3| Mus musculus BAC clone RP24-390N10 from 6, complete sequence Length = 185830 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 157286 actactactactaatactaa 157305
>emb|CR388001.36| Zebrafish DNA sequence from clone CH211-279I17 in linkage group 22, complete sequence Length = 123028 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 81340 actactactactaatactaa 81359
>emb|BX936386.9| Zebrafish DNA sequence from clone CH211-232P21 in linkage group 3, complete sequence Length = 158520 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 95232 actactactactaatactaa 95251
>gb|AC153021.2| Mus musculus 10 BAC RP23-37G3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187132 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 actactactactaatactaaagca 95 ||||||||||||| |||||||||| Sbjct: 13485 actactactactactactaaagca 13462
>emb|AL840635.6| Mouse DNA sequence from clone RP23-418D21 on chromosome 2, complete sequence Length = 201328 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 14703 actactactactaatactaa 14722
>emb|AL589873.11| Mouse DNA sequence from clone RP23-120P1 on chromosome 2, complete sequence Length = 170936 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 104606 actactactactaatactaa 104587
>gb|AC102030.18| Mus musculus chromosome 5, clone RP23-7J3, complete sequence Length = 150101 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 73196 actactactactaatactaa 73177
>gb|AC087276.13| Homo sapiens chromosome 11, clone RP11-484D2, complete sequence Length = 204109 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 188 ctggtcttctttgccggctttccccctc 215 |||||||| ||||| ||||||||||||| Sbjct: 86590 ctggtcttttttgctggctttccccctc 86617
>dbj|AB023058.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:950A3, complete sequence Length = 114450 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 actactactactaatactaa 91 |||||||||||||||||||| Sbjct: 80700 actactactactaatactaa 80681 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,565,735 Number of Sequences: 3902068 Number of extensions: 2565735 Number of successful extensions: 102849 Number of sequences better than 10.0: 156 Number of HSP's better than 10.0 without gapping: 153 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 100992 Number of HSP's gapped (non-prelim): 1844 length of query: 338 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 316 effective length of database: 17,147,199,772 effective search space: 5418515127952 effective search space used: 5418515127952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
