ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MURB_AGRT5 (Q8UDN0) UDP-N-acetylenolpyruvoylglucosamine reductas... 30 3.1
2QORX_HUMAN (Q53FA7) Putative quinone oxidoreductase (EC 1.-.-.-)... 28 8.9
3THYG_HUMAN (P01266) Thyroglobulin precursor 28 8.9

>MURB_AGRT5 (Q8UDN0) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 321

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 340 RHQTGA----NPPPDTAFKLLQEWHGRGLIPGPT*QSSVH 447
           R QTG     NP   +A++L+ E  GRGL+ G    SS+H
Sbjct: 226 REQTGGSTFKNPEGHSAWELIDEAGGRGLVIGGAQMSSLH 265



to top

>QORX_HUMAN (Q53FA7) Putative quinone oxidoreductase (EC 1.-.-.-) (Tumor|
           protein p53-inducible protein 3) (p53-induced protein 3)
          Length = 332

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
 Frame = -2

Query: 366 WRIGSSLVALL-GSYQAQYFVVVEKSLNSFRSG-----SAALP----*MYHLLFLALVIS 217
           W+IG + +ALL G  QAQY  V E  L     G     +AA+P      + LL L   + 
Sbjct: 80  WKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQ 139

Query: 216 AVCRILYEAGCS 181
           A   +L  AG S
Sbjct: 140 AGDYVLIHAGLS 151



to top

>THYG_HUMAN (P01266) Thyroglobulin precursor|
          Length = 2768

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
 Frame = +1

Query: 259 QSR*TRAKRIQTLLNNNKILSLV---------TAEQRHQTGANPPPDTAFKLLQEWHGR 408
           QS     + +Q LL+N+ +L  +         T  Q  Q   N PP+  F+L Q W  +
Sbjct: 733 QSEQAFLRTVQALLSNSSMLPTLSDTYIPQCSTDGQWRQVQCNGPPEQVFELYQRWEAQ 791


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,467,192
Number of Sequences: 219361
Number of extensions: 1365793
Number of successful extensions: 2988
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2988
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top