ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017544.1| Zea mays clone EL01N0422G11.c mRNA sequence 74 5e-10
2gb|AY104899.1| Zea mays PCO137155 mRNA sequence 74 5e-10
3ref|NM_191185.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
5dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AK072636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
7dbj|AK066787.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
8gb|AC122118.7| Mus musculus chromosome 18, clone RP24-225P17, co... 46 0.10
9gb|AC129078.6| Mus musculus BAC clone RP24-71C5 from chromosome ... 46 0.10
10gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, comple... 46 0.10
11ref|XM_569091.1| Cryptococcus neoformans var. neoformans JEC21 h... 44 0.41
12gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 0.41
13gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosom... 42 1.6
14gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
15gb|AC158527.2| Mus musculus BAC clone RP23-266E16 from chromosom... 42 1.6
16gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complet... 42 1.6
17emb|AL033547.8|HS340K22 Human DNA sequence from clone RP3-340K22... 42 1.6
18gb|AF517634.1| Drosophila melanogaster BIR-containing ubiquitin-... 42 1.6
19gb|AY119104.1| Drosophila melanogaster RE07981 full insert cDNA 42 1.6
20ref|NM_141738.3| Drosophila melanogaster Bruce CG6303-RA (Bruce)... 42 1.6
21gb|AC008357.8| Drosophila melanogaster, chromosome 3R, region 86... 42 1.6
22gb|AC160392.2| Mus musculus BAC clone RP23-240E9 from chromosome... 42 1.6
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
24tpe|BN000599.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 42 1.6
25gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24... 42 1.6
26gb|AC154204.2| Mus musculus BAC clone RP24-393D5 from chromosome... 40 6.3
27gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g... 40 6.3
28gb|AY653018.1| Tetrahymena thermophila clone Cbs 3L-3 chromosome... 40 6.3
29gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, com... 40 6.3
30gb|AY247011.1| Diaeretiella rapae microsatellite dr271 sequence 40 6.3
31gb|AC121998.2| Mus musculus BAC clone RP24-318H5 from 2, complet... 40 6.3
32emb|BX004991.18| Zebrafish DNA sequence from clone CH211-222F23 ... 40 6.3
33emb|AL157396.9| Human DNA sequence from clone RP11-437J2 on chro... 40 6.3
34emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 40 6.3
35emb|AJ699161.1| Nicotiana plumbaginifolia mRNA for calcium-depen... 40 6.3
36emb|AL607126.9| Mouse DNA sequence from clone RP23-206I16 on chr... 40 6.3
37emb|CR926359.1| Xenopus tropicalis finished cDNA, clone TGas019m24 40 6.3
38gb|AC153763.3| Loxodonta africana clone VMRC15-160B20, complete ... 40 6.3
39gb|AE014183.1| Mus musculus piebald deletion region section 11 o... 40 6.3
40gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, comp... 40 6.3
41gb|AC008888.7| Homo sapiens chromosome 19 clone CTD-2221F12, com... 40 6.3
42gb|AC023150.5| Homo sapiens BAC clone RP11-709L9 from 4, complet... 40 6.3
43gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, comp... 40 6.3
44gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Can... 40 6.3
45gb|AC009162.11| Homo sapiens chromosome 16 clone RP11-76H6, comp... 40 6.3
46gb|AC153771.3| Loxodonta africana clone VMRC15-435I22, complete ... 40 6.3
47gb|AC010606.7| Homo sapiens chromosome 19 clone CTB-25J19, compl... 40 6.3
48ref|NM_001015938.1| Xenopus tropicalis hypothetical protein LOC5... 40 6.3
49gb|AC074290.5| Homo sapiens BAC clone RP11-305O20 from 2, comple... 40 6.3
50gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Canc... 40 6.3
51gb|AC135966.2| Homo sapiens chromosome 3 clone RP11-94D3, comple... 40 6.3
52emb|BX648699.1|HSM808850 Homo sapiens mRNA; cDNA DKFZp686H1339 (... 40 6.3
53gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete se... 40 6.3
54gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 40 6.3
55emb|AL929234.9| Mouse DNA sequence from clone RP24-225K18 on chr... 40 6.3
56gb|AC156456.1| Loxodonta africana, clone Loxodonta africana-6767... 40 6.3
57dbj|AP006091.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.3
58emb|AL928665.8| Mouse DNA sequence from clone RP23-294O23 on chr... 40 6.3
59emb|AL833773.6| Mouse DNA sequence from clone RP23-434A2 on chro... 40 6.3 
>gb|BT017544.1| Zea mays clone EL01N0422G11.c mRNA sequence
          Length = 1370

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                        
Query: 387  tcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgca 446
            |||||||||| |||||| || || |||||| |||| ||||| || ||||||||||  |||
Sbjct: 1158 tcttcaagaacggcacgtgccagatttgatgccagagccaatctcacagagctcatcgca 1099

                                 
Query: 447  tggattggtaggtgattactg 467
            ||| |||||||||||||||||
Sbjct: 1098 tggcttggtaggtgattactg 1078
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>gb|AY104899.1| Zea mays PCO137155 mRNA sequence
          Length = 793

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                       
Query: 387 tcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgca 446
           |||||||||| |||||| || || |||||| |||| ||||| || ||||||||||  |||
Sbjct: 283 tcttcaagaacggcacgtgccagatttgatgccagagccaatctcacagagctcatcgca 342

                                
Query: 447 tggattggtaggtgattactg 467
           ||| |||||||||||||||||
Sbjct: 343 tggcttggtaggtgattactg 363
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>ref|NM_191185.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2202

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                        
Query: 386  ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 445
            |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 2196 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 2137

                            
Query: 446  atggattggtaggtga 461
            |||| |||||||||||
Sbjct: 2136 atggcttggtaggtga 2121
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                            
Query: 386      ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 445
                |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 31204187 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 31204128

                                
Query: 446      atggattggtaggtga 461
                |||| |||||||||||
Sbjct: 31204127 atggcttggtaggtga 31204112
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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0014K08
          Length = 177263

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                          
Query: 386    ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 445
              |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 130532 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 130473

                              
Query: 446    atggattggtaggtga 461
              |||| |||||||||||
Sbjct: 130472 atggcttggtaggtga 130457
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>dbj|AK072636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133F04, full
            insert sequence
          Length = 2628

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                        
Query: 386  ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 445
            |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 2322 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 2263

                            
Query: 446  atggattggtaggtga 461
            |||| |||||||||||
Sbjct: 2262 atggcttggtaggtga 2247
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>dbj|AK066787.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G22, full
            insert sequence
          Length = 2482

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                        
Query: 386  ttcttcaagaatggcacgggcgaggtttgatcccagggccaacctgacagagctcagtgc 445
            |||||||||||| ||||| || ||||||||| | || || || ||||| ||| ||| |||
Sbjct: 2138 ttcttcaagaattgcacgcgcaaggtttgatgctagagctaatctgacggagttcaatgc 2079

                            
Query: 446  atggattggtaggtga 461
            |||| |||||||||||
Sbjct: 2078 atggcttggtaggtga 2063
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>gb|AC122118.7| Mus musculus chromosome 18, clone RP24-225P17, complete sequence
          Length = 190301

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 300  caacaacaacaaaatactgagcctggt 326
            |||||||||||||| ||||||||||||
Sbjct: 8670 caacaacaacaaaaaactgagcctggt 8644
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>gb|AC129078.6| Mus musculus BAC clone RP24-71C5 from chromosome 18, complete sequence
          Length = 215826

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 300   caacaacaacaaaatactgagcctggt 326
             |||||||||||||| ||||||||||||
Sbjct: 91161 caacaacaacaaaaaactgagcctggt 91187
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>gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, complete sequence
          Length = 233915

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 300   caacaacaacaaaatactgagcctggt 326
             |||||||||||||| ||||||||||||
Sbjct: 62246 caacaacaacaaaaaactgagcctggt 62272
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>ref|XM_569091.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNB00830) partial mRNA
          Length = 892

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 418 ccagggccaacctgacagagctcagt 443
           |||||||||| |||||||||||||||
Sbjct: 60  ccagggccaaactgacagagctcagt 85
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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
              sequence
          Length = 1632307

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 418    ccagggccaacctgacagagctcagt 443
              |||||||||| |||||||||||||||
Sbjct: 237797 ccagggccaaactgacagagctcagt 237822
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>gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosome 12, complete sequence
          Length = 238126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 290    aaactcttctcaacaacaacaaaat 314
              ||||| |||||||||||||||||||
Sbjct: 145276 aaacttttctcaacaacaacaaaat 145252
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>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
              complete sequence
          Length = 151399

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    agcttcttcaagaatggcacg 403
              |||||||||||||||||||||
Sbjct: 106488 agcttcttcaagaatggcacg 106468
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>gb|AC158527.2| Mus musculus BAC clone RP23-266E16 from chromosome 12, complete sequence
          Length = 218736

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 290    aaactcttctcaacaacaacaaaat 314
              ||||| |||||||||||||||||||
Sbjct: 214903 aaacttttctcaacaacaacaaaat 214879
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>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    caagcttcttcaagaatggca 401
              |||||||||||||||||||||
Sbjct: 147246 caagcttcttcaagaatggca 147226
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>emb|AL033547.8|HS340K22 Human DNA sequence from clone RP3-340K22 on chromosome 22q13.1-13.31,
             complete sequence
          Length = 30893

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 300   caacaacaacaaaatactgag 320
             |||||||||||||||||||||
Sbjct: 13972 caacaacaacaaaatactgag 13992
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>gb|AF517634.1| Drosophila melanogaster BIR-containing ubiquitin-conjugating enzyme
            (Bruce) mRNA, complete cds
          Length = 14794

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 363  tccaccagatacagcattcaa 383
            |||||||||||||||||||||
Sbjct: 1507 tccaccagatacagcattcaa 1487
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>gb|AY119104.1| Drosophila melanogaster RE07981 full insert cDNA
          Length = 3617

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 363  tccaccagatacagcattcaa 383
            |||||||||||||||||||||
Sbjct: 1507 tccaccagatacagcattcaa 1487
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>ref|NM_141738.3| Drosophila melanogaster Bruce CG6303-RA (Bruce), mRNA
          Length = 14793

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 363  tccaccagatacagcattcaa 383
            |||||||||||||||||||||
Sbjct: 1506 tccaccagatacagcattcaa 1486
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>gb|AC008357.8| Drosophila melanogaster, chromosome 3R, region 86A-86A, BAC clone
             BACR03L12, complete sequence
          Length = 190672

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 363   tccaccagatacagcattcaa 383
             |||||||||||||||||||||
Sbjct: 63122 tccaccagatacagcattcaa 63142
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>gb|AC160392.2| Mus musculus BAC clone RP23-240E9 from chromosome 9, complete sequence
          Length = 199695

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 381   caagcttcttcaagaatggca 401
             |||||||||||||||||||||
Sbjct: 12487 caagcttcttcaagaatggca 12467
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 383     agcttcttcaagaatggcacg 403
               |||||||||||||||||||||
Sbjct: 2013611 agcttcttcaagaatggcacg 2013591
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>tpe|BN000599.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx70 gene for
           class III peroxidase 70 precursor, exons 1-2
          Length = 1356

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 383 agcttcttcaagaatggcacg 403
           |||||||||||||||||||||
Sbjct: 255 agcttcttcaagaatggcacg 235
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>gb|AE003686.4| Drosophila melanogaster chromosome 3R, section 24 of 118 of the complete
              sequence
          Length = 223505

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 363    tccaccagatacagcattcaa 383
              |||||||||||||||||||||
Sbjct: 167458 tccaccagatacagcattcaa 167478
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>gb|AC154204.2| Mus musculus BAC clone RP24-393D5 from chromosome 17, complete sequence
          Length = 183408

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   accaaagctaaaaacaatag 243
             ||||||||||||||||||||
Sbjct: 34444 accaaagctaaaaacaatag 34425
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>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 150    atgccgggttttttacccaatgat 173
              ||||||| ||||||||||||||||
Sbjct: 731841 atgccggattttttacccaatgat 731818
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>gb|AY653018.1| Tetrahymena thermophila clone Cbs 3L-3 chromosome breakage
           sequence; micronuclear
          Length = 672

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 285 aattcaaactcttctcaaca 304
           ||||||||||||||||||||
Sbjct: 641 aattcaaactcttctcaaca 622
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>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence
          Length = 170831

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    caacaacaacaaaatactga 319
              ||||||||||||||||||||
Sbjct: 160555 caacaacaacaaaatactga 160536
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>gb|AY247011.1| Diaeretiella rapae microsatellite dr271 sequence
          Length = 433

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 300 caacaacaacaaaatactga 319
           ||||||||||||||||||||
Sbjct: 339 caacaacaacaaaatactga 320
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>gb|AC121998.2| Mus musculus BAC clone RP24-318H5 from 2, complete sequence
          Length = 135317

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 290   aaactcttctcaacaacaacaaaa 313
             ||||| ||||||||||||||||||
Sbjct: 32675 aaactattctcaacaacaacaaaa 32652
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>emb|BX004991.18| Zebrafish DNA sequence from clone CH211-222F23 in linkage group 9,
              complete sequence
          Length = 202138

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    caacaacaacaaaatactga 319
              ||||||||||||||||||||
Sbjct: 125196 caacaacaacaaaatactga 125177
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>emb|AL157396.9| Human DNA sequence from clone RP11-437J2 on chromosome 10 Contains the
             3' end of the PDE6C gene for phosphodiesterase 6C,
             cGMP-specific, cone, alpha prime (PDEA2), the C10orf4 gene
             for chromosome 10 open reading frame 4 and the 5' end of
             the LGI1 gene for leucine-rich glioma inactivated 1,
             complete sequence
          Length = 128796

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   caacaacaacaaaatactga 319
             ||||||||||||||||||||
Sbjct: 42844 caacaacaacaaaatactga 42863
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>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
              novel gene, the 5' end of the TCF8 gene for transcription
              factor 8 (represses interleukin 2 expression)
              (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
              pseudogene similar to part of serine palmitoyltransferase,
              long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1,
              SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    caacaacaacaaaatactga 319
              ||||||||||||||||||||
Sbjct: 156704 caacaacaacaaaatactga 156685
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>emb|AJ699161.1| Nicotiana plumbaginifolia mRNA for calcium-dependent protein kinase
           17 (cpk17 gene)
          Length = 1698

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 296 ttctcaacaacaacaaaata 315
           ||||||||||||||||||||
Sbjct: 102 ttctcaacaacaacaaaata 121
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>emb|AL607126.9| Mouse DNA sequence from clone RP23-206I16 on chromosome 11, complete
              sequence
          Length = 221930

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 290    aaactcttctcaacaacaacaaaa 313
              ||||| ||||||||||||||||||
Sbjct: 145759 aaactattctcaacaacaacaaaa 145782
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>emb|CR926359.1| Xenopus tropicalis finished cDNA, clone TGas019m24
          Length = 1900

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 371  atacagcattcaagcttctt 390
            ||||||||||||||||||||
Sbjct: 1728 atacagcattcaagcttctt 1709
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>gb|AC153763.3| Loxodonta africana clone VMRC15-160B20, complete sequence
          Length = 130183

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ttctcaacaacaacaaaata 315
             ||||||||||||||||||||
Sbjct: 11777 ttctcaacaacaacaaaata 11796
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>gb|AE014183.1| Mus musculus piebald deletion region section 11 of 11 of the complete
              sequence
          Length = 249616

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 300    caacaacaacaaaatactgagcct 323
              |||||||||||||||||| |||||
Sbjct: 100620 caacaacaacaaaatactcagcct 100597
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>gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, complete sequence
          Length = 184019

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   caacaacaacaaaatactga 319
             ||||||||||||||||||||
Sbjct: 55553 caacaacaacaaaatactga 55534
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>gb|AC008888.7| Homo sapiens chromosome 19 clone CTD-2221F12, complete sequence
          Length = 119631

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   tcttctcaacaacaacaaaa 313
             ||||||||||||||||||||
Sbjct: 34849 tcttctcaacaacaacaaaa 34830
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>gb|AC023150.5| Homo sapiens BAC clone RP11-709L9 from 4, complete sequence
          Length = 188782

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   caacaacaacaaaatactga 319
             ||||||||||||||||||||
Sbjct: 92747 caacaacaacaaaatactga 92728
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>gb|AC099521.2| Homo sapiens chromosome 16 clone RP11-71L14, complete sequence
          Length = 167245

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   caacaacaacaaaatactga 319
             ||||||||||||||||||||
Sbjct: 74626 caacaacaacaaaatactga 74607
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>gb|AC024903.17| Homo sapiens 16 BAC RP11-71L14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167238

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   caacaacaacaaaatactga 319
             ||||||||||||||||||||
Sbjct: 74620 caacaacaacaaaatactga 74601
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>gb|AC009162.11| Homo sapiens chromosome 16 clone RP11-76H6, complete sequence
          Length = 181650

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    caacaacaacaaaatactga 319
              ||||||||||||||||||||
Sbjct: 148477 caacaacaacaaaatactga 148496
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>gb|AC153771.3| Loxodonta africana clone VMRC15-435I22, complete sequence
          Length = 132352

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  ttctcaacaacaacaaaata 315
            ||||||||||||||||||||
Sbjct: 2652 ttctcaacaacaacaaaata 2671
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>gb|AC010606.7| Homo sapiens chromosome 19 clone CTB-25J19, complete sequence
          Length = 105940

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   cttctcaacaacaacaaaat 314
             ||||||||||||||||||||
Sbjct: 61220 cttctcaacaacaacaaaat 61239
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>ref|NM_001015938.1| Xenopus tropicalis hypothetical protein LOC548692 (LOC548692), mRNA
          Length = 1900

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 371  atacagcattcaagcttctt 390
            ||||||||||||||||||||
Sbjct: 1728 atacagcattcaagcttctt 1709
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>gb|AC074290.5| Homo sapiens BAC clone RP11-305O20 from 2, complete sequence
          Length = 172706

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   ctcaacaacaacaaaatact 317
             ||||||||||||||||||||
Sbjct: 42081 ctcaacaacaacaaaatact 42100
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>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166966

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   actcttctcaacaacaacaa 311
             ||||||||||||||||||||
Sbjct: 59364 actcttctcaacaacaacaa 59383
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>gb|AC135966.2| Homo sapiens chromosome 3 clone RP11-94D3, complete sequence
          Length = 162867

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   caacaacaacaaaatactga 319
             ||||||||||||||||||||
Sbjct: 21369 caacaacaacaaaatactga 21388
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>emb|BX648699.1|HSM808850 Homo sapiens mRNA; cDNA DKFZp686H1339 (from clone DKFZp686H1339)
          Length = 3644

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  caacaacaacaaaatactga 319
            ||||||||||||||||||||
Sbjct: 2148 caacaacaacaaaatactga 2129
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>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   caacaacaacaaaatactga 319
             ||||||||||||||||||||
Sbjct: 39116 caacaacaacaaaatactga 39097
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>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    acaggctcactgtgagtaca 133
              ||||||||||||||||||||
Sbjct: 108505 acaggctcactgtgagtaca 108524
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>emb|AL929234.9| Mouse DNA sequence from clone RP24-225K18 on chromosome 11, complete
             sequence
          Length = 168500

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    aaacgttggaggaaggaaca 70
             ||||||||||||||||||||
Sbjct: 13907 aaacgttggaggaaggaaca 13926
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>gb|AC156456.1| Loxodonta africana, clone Loxodonta africana-6767875J3, complete
             sequence
          Length = 40567

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   ttctcaacaacaacaaaata 315
             ||||||||||||||||||||
Sbjct: 32522 ttctcaacaacaacaaaata 32503
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>dbj|AP006091.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT21D16, TM0157a,
             complete sequence
          Length = 72616

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   cgtataaaatacgacagaca 214
             ||||||||||||||||||||
Sbjct: 67664 cgtataaaatacgacagaca 67645
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>emb|AL928665.8| Mouse DNA sequence from clone RP23-294O23 on chromosome 2, complete
             sequence
          Length = 81950

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 290   aaactcttctcaacaacaacaaaa 313
             ||||| ||||||||||||||||||
Sbjct: 70966 aaactattctcaacaacaacaaaa 70989
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>emb|AL833773.6| Mouse DNA sequence from clone RP23-434A2 on chromosome 4, complete
             sequence
          Length = 157131

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   actcttctcaacaacaacaa 311
             ||||||||||||||||||||
Sbjct: 18720 actcttctcaacaacaacaa 18739


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,008,959
Number of Sequences: 3902068
Number of extensions: 5008959
Number of successful extensions: 195031
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194776
Number of HSP's gapped (non-prelim): 255
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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