Clone Name | rbastl17a09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450186.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2532 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 345 cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392 |||||| |||| ||||||||| ||||||||| |||||||||||||||| Sbjct: 2439 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 2392
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 345 cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392 |||||| |||| ||||||||| ||||||||| |||||||||||||||| Sbjct: 21096147 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 21096100
>dbj|AK100579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105L14, full insert sequence Length = 3079 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 345 cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392 |||||| |||| ||||||||| ||||||||| |||||||||||||||| Sbjct: 2698 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 2651
>dbj|AK058661.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G04, full insert sequence Length = 451 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 345 cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392 |||||| |||| ||||||||| ||||||||| |||||||||||||||| Sbjct: 69 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 22
>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0478E02 Length = 140715 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 345 cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392 |||||| |||| ||||||||| ||||||||| |||||||||||||||| Sbjct: 117447 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 117400
>gb|AE009123.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 149 of 256 of the complete sequence Length = 11363 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 ggtcgggcagcgggacgatctt 347 |||||||||||||||||||||| Sbjct: 7770 ggtcgggcagcgggacgatctt 7749
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 326 ggtcgggcagcgggacgatctt 347 |||||||||||||||||||||| Sbjct: 1653727 ggtcgggcagcgggacgatctt 1653706
>emb|CR388073.11| Zebrafish DNA sequence from clone CH211-197K16 in linkage group 25, complete sequence Length = 131786 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 tatctgaggaggtgcccttgc 393 ||||||||||||||||||||| Sbjct: 107068 tatctgaggaggtgcccttgc 107048
>gb|BC101324.2| Homo sapiens similar to CTAGE6, mRNA (cDNA clone IMAGE:40024903), partial cds Length = 1638 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 229 caggttatcatcatccgttg 210
>gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complete sequence Length = 169723 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 55976 caggttatcatcatccgttg 55995
>gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, complete sequence Length = 200123 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 122015 caggttatcatcatccgttg 121996
>gb|AF338232.1| Homo sapiens CTAGE-4 protein mRNA, complete cds Length = 1967 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 257 caggttatcatcatccgttg 238
>gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complete sequence Length = 130030 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 119987 caggttatcatcatccgttg 120006 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 35997 caggttatcatcatccgttg 35978
>emb|AL645507.7| Human DNA sequence from clone RP11-476C24 on chromosome 1 Contains part of the gene for a novel protein, complete sequence Length = 102743 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 caagacattcagagaggttt 196 |||||||||||||||||||| Sbjct: 24165 caagacattcagagaggttt 24184
>gb|AC158790.5| Mus musculus chromosome 1, clone RP23-223M9, complete sequence Length = 178205 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 acattcagagaggttttaca 200 |||||||||||||||||||| Sbjct: 131622 acattcagagaggttttaca 131641
>emb|AL662839.15| Mouse DNA sequence from clone RP23-472O5 on chromosome 11 Contains the 5' end of the Glra1 gene for glycine receptor alpha 1 subunit and a CpG island, complete sequence Length = 130292 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 acattttcatctcttctgat 414 |||||||||||||||||||| Sbjct: 105470 acattttcatctcttctgat 105451
>gb|BC043153.2| Homo sapiens CTAGE family, member 6, mRNA (cDNA clone MGC:41943 IMAGE:5296763), complete cds Length = 2620 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 916 caggttatcatcatccgttg 897
>gb|AC103619.12| Mus musculus chromosome 1, clone RP24-217I23, complete sequence Length = 152116 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 acattcagagaggttttaca 200 |||||||||||||||||||| Sbjct: 3943 acattcagagaggttttaca 3962
>ref|NM_001008747.1| Homo sapiens similar to CTAGE6 (LOC441294), mRNA Length = 2355 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 900 caggttatcatcatccgttg 881
>ref|XM_935638.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5 (LOC641899), mRNA Length = 4583 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 2072 caggttatcatcatccgttg 2053
>ref|XM_499498.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA Length = 3172 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 1487 caggttatcatcatccgttg 1468
>ref|XM_936769.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5 (LOC647707), mRNA Length = 4583 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 2072 caggttatcatcatccgttg 2053
>ref|XM_496933.2| PREDICTED: Homo sapiens similar to CTAGE family, member 5 (LOC441296), mRNA Length = 4583 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 2072 caggttatcatcatccgttg 2053
>ref|XM_498461.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA Length = 3172 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 1487 caggttatcatcatccgttg 1468
>ref|XM_928907.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5 (LOC643854), mRNA Length = 4583 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 2072 caggttatcatcatccgttg 2053
>gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromosome 7, complete sequence Length = 162801 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 114015 caggttatcatcatccgttg 114034
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ttggcaaaactatcaattga 22 |||||||||||||||||||| Sbjct: 5022138 ttggcaaaactatcaattga 5022157
>gb|AF289199.1|AF289199 Mus musculus junctin and aspartyl beta-hydroxylase (Asph) genes, partial cds Length = 12427 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 actctgaagagaagtcagta 243 |||||||||||||||||||| Sbjct: 5391 actctgaagagaagtcagta 5372
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ttggcaaaactatcaattga 22 |||||||||||||||||||| Sbjct: 63827 ttggcaaaactatcaattga 63846
>emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on chromosome 6 Contains part of the gene for a 7 transmembrane receptor (rhodopsin family) (olfactory receptor like) protein, the gene for WUGSC:H_DJ0988G15.3 protein, part of the PDNP3 (phosphodiesterase I/nucleotide pyrophosphatase 3) gene, ESTs, STSs and GSSs, complete sequence Length = 59130 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 31234 caggttatcatcatccgttg 31253
>emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chromosome 4, complete sequence Length = 198991 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 actctgaagagaagtcagta 243 |||||||||||||||||||| Sbjct: 29581 actctgaagagaagtcagta 29600
>gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complete sequence Length = 140915 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 caggttatcatcatccgttg 170 |||||||||||||||||||| Sbjct: 92861 caggttatcatcatccgttg 92842 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,116,328 Number of Sequences: 3902068 Number of extensions: 3116328 Number of successful extensions: 69150 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69083 Number of HSP's gapped (non-prelim): 67 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)