ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_450186.1| Oryza sativa (japonica cultivar-group), mRNA 64 4e-07
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
3dbj|AK100579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
4dbj|AK058661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
5dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
6gb|AE009123.1| Agrobacterium tumefaciens str. C58 circular chrom... 44 0.39
7gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 44 0.39
8emb|CR388073.11| Zebrafish DNA sequence from clone CH211-197K16 ... 42 1.6
9gb|BC101324.2| Homo sapiens similar to CTAGE6, mRNA (cDNA clone ... 40 6.1
10gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complet... 40 6.1
11gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, comple... 40 6.1
12gb|AF338232.1| Homo sapiens CTAGE-4 protein mRNA, complete cds 40 6.1
13gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complet... 40 6.1
14emb|AL645507.7| Human DNA sequence from clone RP11-476C24 on chr... 40 6.1
15gb|AC158790.5| Mus musculus chromosome 1, clone RP23-223M9, comp... 40 6.1
16emb|AL662839.15| Mouse DNA sequence from clone RP23-472O5 on chr... 40 6.1
17gb|BC043153.2| Homo sapiens CTAGE family, member 6, mRNA (cDNA c... 40 6.1
18gb|AC103619.12| Mus musculus chromosome 1, clone RP24-217I23, co... 40 6.1
19ref|NM_001008747.1| Homo sapiens similar to CTAGE6 (LOC441294), ... 40 6.1
20ref|XM_935638.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 6.1
21ref|XM_499498.2| PREDICTED: Homo sapiens CTAGE family, member 6 ... 40 6.1
22ref|XM_936769.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 6.1
23ref|XM_496933.2| PREDICTED: Homo sapiens similar to CTAGE family... 40 6.1
24ref|XM_498461.2| PREDICTED: Homo sapiens CTAGE family, member 6 ... 40 6.1
25ref|XM_928907.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 6.1
26gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromo... 40 6.1
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
28gb|AF289199.1|AF289199 Mus musculus junctin and aspartyl beta-hy... 40 6.1
29dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
30emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on ch... 40 6.1
31emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chro... 40 6.1
32gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complet... 40 6.1

>ref|XM_450186.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2532

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 345  cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392
            |||||| |||| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 2439 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 2392



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                                
Query: 345      cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392
                |||||| |||| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 21096147 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 21096100



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>dbj|AK100579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105L14, full
            insert sequence
          Length = 3079

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 345  cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392
            |||||| |||| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 2698 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 2651



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>dbj|AK058661.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G04, full
           insert sequence
          Length = 451

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 345 cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392
           |||||| |||| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 69  cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 22



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>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone: P0478E02
          Length = 140715

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 345    cttaccatcaggctctaccttcactgggtatctgaggaggtgcccttg 392
              |||||| |||| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 117447 cttaccgtcagcctctaccttgactgggtatttgaggaggtgcccttg 117400



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>gb|AE009123.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 149
            of 256 of the complete sequence
          Length = 11363

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 326  ggtcgggcagcgggacgatctt 347
            ||||||||||||||||||||||
Sbjct: 7770 ggtcgggcagcgggacgatctt 7749



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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 326     ggtcgggcagcgggacgatctt 347
               ||||||||||||||||||||||
Sbjct: 1653727 ggtcgggcagcgggacgatctt 1653706



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>emb|CR388073.11| Zebrafish DNA sequence from clone CH211-197K16 in linkage group 25,
              complete sequence
          Length = 131786

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 373    tatctgaggaggtgcccttgc 393
              |||||||||||||||||||||
Sbjct: 107068 tatctgaggaggtgcccttgc 107048



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>gb|BC101324.2| Homo sapiens similar to CTAGE6, mRNA (cDNA clone IMAGE:40024903),
           partial cds
          Length = 1638

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 caggttatcatcatccgttg 170
           ||||||||||||||||||||
Sbjct: 229 caggttatcatcatccgttg 210



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>gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complete sequence
          Length = 169723

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   caggttatcatcatccgttg 170
             ||||||||||||||||||||
Sbjct: 55976 caggttatcatcatccgttg 55995



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>gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, complete sequence
          Length = 200123

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    caggttatcatcatccgttg 170
              ||||||||||||||||||||
Sbjct: 122015 caggttatcatcatccgttg 121996



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>gb|AF338232.1| Homo sapiens CTAGE-4 protein mRNA, complete cds
          Length = 1967

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 caggttatcatcatccgttg 170
           ||||||||||||||||||||
Sbjct: 257 caggttatcatcatccgttg 238



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>gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complete sequence
          Length = 130030

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    caggttatcatcatccgttg 170
              ||||||||||||||||||||
Sbjct: 119987 caggttatcatcatccgttg 120006



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   caggttatcatcatccgttg 170
             ||||||||||||||||||||
Sbjct: 35997 caggttatcatcatccgttg 35978



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>emb|AL645507.7| Human DNA sequence from clone RP11-476C24 on chromosome 1 Contains part
             of the gene for a novel protein, complete sequence
          Length = 102743

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   caagacattcagagaggttt 196
             ||||||||||||||||||||
Sbjct: 24165 caagacattcagagaggttt 24184



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>gb|AC158790.5| Mus musculus chromosome 1, clone RP23-223M9, complete sequence
          Length = 178205

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    acattcagagaggttttaca 200
              ||||||||||||||||||||
Sbjct: 131622 acattcagagaggttttaca 131641



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>emb|AL662839.15| Mouse DNA sequence from clone RP23-472O5 on chromosome 11 Contains the 5'
              end of the Glra1 gene for glycine receptor alpha 1 subunit
              and a CpG island, complete sequence
          Length = 130292

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    acattttcatctcttctgat 414
              ||||||||||||||||||||
Sbjct: 105470 acattttcatctcttctgat 105451



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>gb|BC043153.2| Homo sapiens CTAGE family, member 6, mRNA (cDNA clone MGC:41943
           IMAGE:5296763), complete cds
          Length = 2620

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 caggttatcatcatccgttg 170
           ||||||||||||||||||||
Sbjct: 916 caggttatcatcatccgttg 897



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>gb|AC103619.12| Mus musculus chromosome 1, clone RP24-217I23, complete sequence
          Length = 152116

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  acattcagagaggttttaca 200
            ||||||||||||||||||||
Sbjct: 3943 acattcagagaggttttaca 3962



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>ref|NM_001008747.1| Homo sapiens similar to CTAGE6 (LOC441294), mRNA
          Length = 2355

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 caggttatcatcatccgttg 170
           ||||||||||||||||||||
Sbjct: 900 caggttatcatcatccgttg 881



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>ref|XM_935638.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC641899), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  caggttatcatcatccgttg 170
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_499498.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  caggttatcatcatccgttg 170
            ||||||||||||||||||||
Sbjct: 1487 caggttatcatcatccgttg 1468



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>ref|XM_936769.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC647707), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  caggttatcatcatccgttg 170
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_496933.2| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC441296), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  caggttatcatcatccgttg 170
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_498461.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  caggttatcatcatccgttg 170
            ||||||||||||||||||||
Sbjct: 1487 caggttatcatcatccgttg 1468



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>ref|XM_928907.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC643854), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  caggttatcatcatccgttg 170
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromosome 7, complete
              sequence
          Length = 162801

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    caggttatcatcatccgttg 170
              ||||||||||||||||||||
Sbjct: 114015 caggttatcatcatccgttg 114034



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 3       ttggcaaaactatcaattga 22
               ||||||||||||||||||||
Sbjct: 5022138 ttggcaaaactatcaattga 5022157



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>gb|AF289199.1|AF289199 Mus musculus junctin and aspartyl beta-hydroxylase (Asph) genes,
            partial cds
          Length = 12427

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 224  actctgaagagaagtcagta 243
            ||||||||||||||||||||
Sbjct: 5391 actctgaagagaagtcagta 5372



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>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0049I08
          Length = 144379

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ttggcaaaactatcaattga 22
             ||||||||||||||||||||
Sbjct: 63827 ttggcaaaactatcaattga 63846



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>emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on chromosome 6 Contains part
             of the gene for a 7 transmembrane receptor (rhodopsin
             family) (olfactory receptor like) protein, the gene for
             WUGSC:H_DJ0988G15.3 protein, part of the PDNP3
             (phosphodiesterase I/nucleotide pyrophosphatase 3) gene,
             ESTs, STSs and GSSs, complete sequence
          Length = 59130

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   caggttatcatcatccgttg 170
             ||||||||||||||||||||
Sbjct: 31234 caggttatcatcatccgttg 31253



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>emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chromosome 4, complete
             sequence
          Length = 198991

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   actctgaagagaagtcagta 243
             ||||||||||||||||||||
Sbjct: 29581 actctgaagagaagtcagta 29600



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>gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complete sequence
          Length = 140915

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   caggttatcatcatccgttg 170
             ||||||||||||||||||||
Sbjct: 92861 caggttatcatcatccgttg 92842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,116,328
Number of Sequences: 3902068
Number of extensions: 3116328
Number of successful extensions: 69150
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69083
Number of HSP's gapped (non-prelim): 67
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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