ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YN25_YEAST (P53831) Hypothetical 14.1 kDa protein in SEC21-MRPL1... 30 2.9
2ATKA_PROAC (Q6ABJ2) Potassium-transporting ATPase A chain (EC 3.... 28 8.6
3BACH2_MOUSE (P97303) Transcription regulator protein BACH2 (BTB ... 28 8.6

>YN25_YEAST (P53831) Hypothetical 14.1 kDa protein in SEC21-MRPL10 intergenic|
           region
          Length = 123

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 72  VNVSLRLENITSQVDKFSLQENKKVQTQLVKRNENSFLSRPNTG 203
           +NV + LEN ++ + KF   EN+     L   ++N + +RP  G
Sbjct: 7   INVDIILENASNAIKKFERYENRTRVPTLEGWDDNHYTNRPCVG 50



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>ATKA_PROAC (Q6ABJ2) Potassium-transporting ATPase A chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase A chain) (ATP
           phosphohydrolase [potassium-transporting] A chain)
           (Potassium-binding and translocating subunit A)
          Length = 556

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 287 LIYRRNSVA*KGGRAVAGIEASAGWTTAA 201
           L+Y   S A   G A AG++AS  W  AA
Sbjct: 455 LVYAFTSAANNNGSAFAGLDASTNWLCAA 483



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>BACH2_MOUSE (P97303) Transcription regulator protein BACH2 (BTB and CNC homolog|
           2)
          Length = 716

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 84  LRLENITSQVDKFSLQENKKVQTQLVKRNENSFLSRPNTGCSRP 215
           LR+ N+      F       +QTQL+ R +  F+ R ++ C RP
Sbjct: 116 LRMHNLEDSCFSF-------LQTQLLNREDGLFVCRKDSACQRP 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,543,470
Number of Sequences: 219361
Number of extensions: 987412
Number of successful extensions: 2336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2334
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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