ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 309 3e-81
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 303 2e-79
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 6e-18
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 6e-18
5dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
6dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 100 6e-18
8emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for pu... 94 4e-16
9emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for pu... 94 4e-16
10emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic tr... 86 9e-14
11gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence 56 8e-05
12gb|AY110434.1| Zea mays CL533_2 mRNA sequence 52 0.001
13gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete se... 46 0.077
14gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete s... 46 0.077
15emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 i... 44 0.30
16emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5... 44 0.30
17gb|AY109824.1| Zea mays CL533_1 mRNA sequence 44 0.30
18emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 42 1.2
19emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chr... 42 1.2
20gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, compl... 42 1.2
21gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N... 42 1.2
22gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosom... 40 4.7
23gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, com... 40 4.7
24gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, c... 40 4.7
25gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome... 40 4.7
26gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's ... 40 4.7
27emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on ch... 40 4.7
28emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chr... 40 4.7
29emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chr... 40 4.7
30gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's... 40 4.7
31emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chr... 40 4.7
32emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo... 40 4.7
33emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in... 40 4.7
34emb|AL672010.8| Mouse DNA sequence from clone RP23-223C15 on chr... 40 4.7
35emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 4.7
36emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 ... 40 4.7
37gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, comp... 40 4.7
38gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, co... 40 4.7
39dbj|AK135378.1| Mus musculus 12 days embryo female mullerian duc... 40 4.7
40dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 4.7
41gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, c... 40 4.7
42gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, ... 40 4.7
43dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 4.7
44emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chro... 40 4.7
45emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, ... 40 4.7
46emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 4.7
47emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in ... 40 4.7
48emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 i... 40 4.7
49emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in ... 40 4.7
50emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on ch... 40 4.7
51emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-9... 40 4.7
52gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, com... 40 4.7
53gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, c... 40 4.7
54gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete... 40 4.7
55emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in... 40 4.7
56gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 4.7
57gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, compl... 40 4.7

>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  309 bits (156), Expect = 3e-81
 Identities = 159/160 (99%)
 Strand = Plus / Minus

                                                                        
Query: 26   aagccaaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgta 85
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 86   accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 146  aataataacattggaggagacacaaaaacatcccatttga 185
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704



 Score =  234 bits (118), Expect = 2e-58
 Identities = 147/154 (95%), Gaps = 2/154 (1%)
 Strand = Plus / Minus

                                                                        
Query: 205  gccttgttcattcccaggctccagcaagagttaggccgccgtcgcc-gagagaccaaaat 263
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagaccaaa-t 2635

                                                                        
Query: 264  ccatggcttcctcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatat 323
            |||||||||| | || ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaaatat 2575

                                              
Query: 324  acagctcaaaactggctgttgctcacatcccagt 357
            ||||||||||||||||||||||||||||||||||
Sbjct: 2574 acagctcaaaactggctgttgctcacatcccagt 2541



to top

>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  303 bits (153), Expect = 2e-79
 Identities = 153/153 (100%)
 Strand = Plus / Minus

                                                                        
Query: 31   aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 90
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 91   cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 151  taacattggaggagacacaaaaacatcccattt 183
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710



 Score =  272 bits (137), Expect = 7e-70
 Identities = 149/153 (97%)
 Strand = Plus / Minus

                                                                        
Query: 205  gccttgttcattcccaggctccagcaagagttaggccgccgtcgccgagagaccaaaatc 264
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                        
Query: 265  catggcttcctcctttcctccaaacaataatcaacactcatgtaacctcgcaaaaatata 324
            ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaaatata 2577

                                             
Query: 325  cagctcaaaactggctgttgctcacatcccagt 357
            |||||||||||||||||||||||||||||||||
Sbjct: 2576 cagctcaaaactggctgttgctcacatcccagt 2544



to top

>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 69    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 127
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 128   gtgtaagaactgaaaagaaataataa 153
             ||||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                         
Query: 286   aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 345
             |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 42296 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 42355

                    
Query: 346   tcacatc 352
             |||||||
Sbjct: 42356 tcacatc 42362



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 69       tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 127
                |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 128      gtgtaagaactgaaaagaaataataa 153
                ||||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                            
Query: 286      aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 345
                |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 24921711 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 24921770

                       
Query: 346      tcacatc 352
                |||||||
Sbjct: 24921771 tcacatc 24921777



to top

>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 69   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 127
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 128  gtgtaagaactgaaaagaaataataa 153
            ||||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 286  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 345
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2604 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2545

                   
Query: 346  tcacatc 352
            |||||||
Sbjct: 2544 tcacatc 2538



to top

>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 69   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 127
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 128  gtgtaagaactgaaaagaaataataa 153
            ||||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 286  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 345
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 1510 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 1451

                   
Query: 346  tcacatc 352
            |||||||
Sbjct: 1450 tcacatc 1444



to top

>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 69    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 127
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 128   gtgtaagaactgaaaagaaataataa 153
             ||||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                         
Query: 286   aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 345
             |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 49825 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 49884

                    
Query: 346   tcacatc 352
             |||||||
Sbjct: 49885 tcacatc 49891



to top

>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar Gigante
          Length = 2599

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 286  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 345
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2572 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2513

                   
Query: 346  tcacatc 352
            |||||||
Sbjct: 2512 tcacatc 2506



to top

>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 286  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 345
            |||||||||| ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2565 aaacaataatgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2506

                   
Query: 346  tcacatc 352
            |||||||
Sbjct: 2505 tcacatc 2499



to top

>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                        
Query: 286  aaacaataatcaacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgc 345
            |||||||||  ||||||||| | |||| ||||||||||||||| ||||||||||||||||
Sbjct: 2666 aaacaataacgaacactcatctgaccttgcaaaaatatacagcacaaaactggctgttgc 2607

                   
Query: 346  tcacatc 352
            |||||||
Sbjct: 2606 tcacatc 2600



to top

>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 297 aacactcatgtaacctcgcaaaaatatacagctcaaaactggctgttgctcacatc 352
           ||||||||| | | ||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 132 aacactcatctgatctcgcaaaattatacagcccaaaactggctgttcctcgcatc 187



to top

>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 311 ctcgcaaaaatatacagctcaaaactggctgttgctcacatc 352
           ||||||||| |||||||| |||||||||||||| ||| ||||
Sbjct: 600 ctcgcaaaattatacagcccaaaactggctgttcctcgcatc 559



to top

>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence
          Length = 92346

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 168   caaaaacatcccatttgacagaagaag 194
             |||||||||||||||||| ||||||||
Sbjct: 45816 caaaaacatcccatttgagagaagaag 45842



to top

>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 168   caaaaacatcccatttgacagaagaag 194
             |||||||||||||||||| ||||||||
Sbjct: 28363 caaaaacatcccatttgagagaagaag 28337



to top

>emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 in linkage group 8,
             complete sequence
          Length = 150519

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 32    aaataatcttagattcagtttt 53
             ||||||||||||||||||||||
Sbjct: 27178 aaataatcttagattcagtttt 27199



to top

>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 132  aagaactgaaaagaaataataacatt 157
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204



to top

>gb|AY109824.1| Zea mays CL533_1 mRNA sequence
          Length = 2894

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 311  ctcgcaaaaatatacagctcaaaactggctgttgctca 348
            ||||||||| |||||||||||||| || ||||| ||||
Sbjct: 2656 ctcgcaaaattatacagctcaaaattgtctgttcctca 2619



to top

>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 60     ctacaatgctgacacgatatattgt 84
              |||||||||||| ||||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattgt 122707



to top

>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3
             Contains a signal sequence receptor, alpha
             (translocon-associated protein alpha) (SSR1) pseudogene,
             complete sequence
          Length = 151603

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 216   tcccaggctccagcaagagtt 236
             |||||||||||||||||||||
Sbjct: 87107 tcccaggctccagcaagagtt 87087



to top

>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence
          Length = 67124

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 216  tcccaggctccagcaagagtt 236
            |||||||||||||||||||||
Sbjct: 3598 tcccaggctccagcaagagtt 3618



to top

>gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N11, complete sequence
          Length = 83029

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 216   tcccaggctccagcaagagtt 236
             |||||||||||||||||||||
Sbjct: 34025 tcccaggctccagcaagagtt 34005



to top

>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   gaaaagaaataataacattg 158
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342



to top

>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    aaattgtgtaagaactgaaa 142
              ||||||||||||||||||||
Sbjct: 107485 aaattgtgtaagaactgaaa 107504



to top

>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence
          Length = 192584

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 119    ttacaaattgtgtaagaactgaaaagaaataa 150
              |||||||| || ||||||||||||| ||||||
Sbjct: 132634 ttacaaatagtttaagaactgaaaataaataa 132665



to top

>gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome 18, complete sequence
          Length = 190023

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   cccaggctccagcaagagtt 236
             ||||||||||||||||||||
Sbjct: 97827 cccaggctccagcaagagtt 97808



to top

>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tgaaaagaaataataacatt 157
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844



to top

>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
           sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 126 ttgtgtaagaactgaaaagaaata 149
           |||||||||||||||||| |||||
Sbjct: 55  ttgtgtaagaactgaaaaaaaata 32



to top

>emb|AL354692.23| Human DNA sequence from clone RP11-361M4 on chromosome 9 Contains a
             novel pseudogene, complete sequence
          Length = 110443

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   caaaaatatacagctcaaaa 334
             ||||||||||||||||||||
Sbjct: 35208 caaaaatatacagctcaaaa 35189



to top

>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3'
              end of a novel gene, and a novel pseudogene, complete
              sequence
          Length = 131366

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 126    ttgtgtaagaactgaaaagaaata 149
              |||||||||||||||||| |||||
Sbjct: 129421 ttgtgtaagaactgaaaaaaaata 129398



to top

>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tgaaaagaaataataacatt 157
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606



to top

>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
             Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes
             and two CpG islands, complete sequence
          Length = 187709

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ttcattcccaggctccagca 230
             ||||||||||||||||||||
Sbjct: 35935 ttcattcccaggctccagca 35916



to top

>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 131 taagaactgaaaagaaataa 150
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620



to top

>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    atgctgacacgatatattgt 84
             ||||||||||||||||||||
Sbjct: 54458 atgctgacacgatatattgt 54439



to top

>emb|AL672010.8| Mouse DNA sequence from clone RP23-223C15 on chromosome 11 Contains
             three novel genes and a CpG island, complete sequence
          Length = 193223

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   gcttcctcctttcctccaaa 288
             ||||||||||||||||||||
Sbjct: 19388 gcttcctcctttcctccaaa 19407



to top

>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     atgctgacacgatatattgt 84
              ||||||||||||||||||||
Sbjct: 198757 atgctgacacgatatattgt 198776



to top

>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tgaaaagaaataataacatt 157
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763



to top

>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   acaaattgtgtaagaactga 140
             ||||||||||||||||||||
Sbjct: 56401 acaaattgtgtaagaactga 56382



to top

>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   ttgttcattcccaggctcca 227
             ||||||||||||||||||||
Sbjct: 70836 ttgttcattcccaggctcca 70817



to top

>dbj|AK135378.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820409O14 product:unclassifiable, full
            insert sequence
          Length = 3242

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  cagctcaaaactggctgttg 344
            ||||||||||||||||||||
Sbjct: 2547 cagctcaaaactggctgttg 2566



to top

>dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130097D18
           product:unclassifiable, full insert sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 cccaggctccagcaagagtt 236
           ||||||||||||||||||||
Sbjct: 28  cccaggctccagcaagagtt 9



to top

>gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, complete sequence
          Length = 41476

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  gtgtaagaactgaaaagaaa 147
            ||||||||||||||||||||
Sbjct: 5836 gtgtaagaactgaaaagaaa 5855



to top

>gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, complete sequence
          Length = 62355

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    aagccaaaataatcttagat 45
             ||||||||||||||||||||
Sbjct: 14713 aagccaaaataatcttagat 14732



to top

>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    taagaactgaaaagaaataataac 154
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724



to top

>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gaaaagaaataataacattg 158
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810



to top

>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    atgctgacacgatatattgt 84
             ||||||||||||||||||||
Sbjct: 50947 atgctgacacgatatattgt 50928



to top

>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    atgctgacacgatatattgt 84
             ||||||||||||||||||||
Sbjct: 46843 atgctgacacgatatattgt 46824



to top

>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 tgaaaagaaataataacatt 157
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379



to top

>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    atgctgacacgatatattgt 84
             ||||||||||||||||||||
Sbjct: 78894 atgctgacacgatatattgt 78875



to top

>emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in linkage group 20,
             complete sequence
          Length = 209360

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    atgctgacacgatatattgt 84
             ||||||||||||||||||||
Sbjct: 38990 atgctgacacgatatattgt 38971



to top

>emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete
              sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    gctcaaaactggctgttgct 346
              ||||||||||||||||||||
Sbjct: 133196 gctcaaaactggctgttgct 133215



to top

>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 151   taacattggaggagacacaaaaac 174
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116



to top

>gb|AC163101.9| Mus musculus chromosome 18, clone RP24-177G6, complete sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    cagctcaaaactggctgttg 344
              ||||||||||||||||||||
Sbjct: 125944 cagctcaaaactggctgttg 125963



to top

>gb|AC102618.19| Mus musculus chromosome 18, clone RP23-426G16, complete sequence
          Length = 242449

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   cagctcaaaactggctgttg 344
             ||||||||||||||||||||
Sbjct: 68402 cagctcaaaactggctgttg 68421



to top

>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ttcccaggctccagcaagag 234
             ||||||||||||||||||||
Sbjct: 42008 ttcccaggctccagcaagag 41989



to top

>emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in linkage group 1,
              complete sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     atgctgacacgatatattgt 84
              ||||||||||||||||||||
Sbjct: 135077 atgctgacacgatatattgt 135096



to top

>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 270    cttcctcctttcctccaaacaata 293
              ||||||||||||||||| ||||||
Sbjct: 801802 cttcctcctttcctccatacaata 801779



to top

>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  gaaaagaaataataacattg 158
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,083,425
Number of Sequences: 3902068
Number of extensions: 4083425
Number of successful extensions: 93005
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92835
Number of HSP's gapped (non-prelim): 164
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top