ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O2T11_HUMAN (Q8NH01) Olfactory receptor 2T11 (Olfactory receptor... 29 3.2
2MADS2_PETHY (Q07474) Floral homeotic protein PMADS 2 28 7.1
3YOR3_YEREN (P28836) Hypothetical UPF0075 protein (ORF3) 27 9.2

>O2T11_HUMAN (Q8NH01) Olfactory receptor 2T11 (Olfactory receptor OR1-65)|
          Length = 316

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 177 SYKGGKISSYRVPSQGGSKLAWEPQNGIITSSSII*EADFYGFFRPQT-HTGRTDGRVAA 353
           SY    ++ +R+PS  G K A+   +  +T  SI   A FY +  PQ+ HT   D  V+A
Sbjct: 214 SYSLILLTIHRMPSAEGRKKAFTTCSSHLTVVSIFYGAAFYTYVLPQSFHTPEQDKVVSA 273



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>MADS2_PETHY (Q07474) Floral homeotic protein PMADS 2|
          Length = 212

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 187 EGKFLLIVYHHREVLSLRGNLRMVSSHHHQ 276
           E K L    H +E+ ++ GN+RM+   +HQ
Sbjct: 156 EHKQLQYALHQKEMAAMGGNMRMIEEVYHQ 185



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>YOR3_YEREN (P28836) Hypothetical UPF0075 protein (ORF3)|
          Length = 125

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 ERLISTGFFAPKPILDGRTDVLLPVTAVCV 372
           ERL+  G  A  P++  R   LLP T VCV
Sbjct: 63  ERLLVCGGGARNPLVMSRMSTLLPGTEVCV 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,771,543
Number of Sequences: 219361
Number of extensions: 861146
Number of successful extensions: 1909
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1908
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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