ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl17a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complet... 904 0.0
2gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds,... 264 2e-67
3ref|NM_196630.1| Oryza sativa (japonica cultivar-group) putative... 86 1e-13
4gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
5gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
6dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 86 1e-13
8dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
9gb|AC122747.11| Mus musculus chromosome 9, clone RP23-217J11, co... 44 0.40
10emb|BX070512.1|CNS09QKK Single read from an extremity of a full-... 42 1.6
11gb|AC167141.2| Mus musculus BAC clone RP23-313L4 from chromosome... 40 6.2
12gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, com... 40 6.2
13gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosom... 40 6.2
14gb|AC124675.9| Mus musculus chromosome 15, clone RP24-88M7, comp... 40 6.2
15gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosom... 40 6.2
16gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete... 40 6.2
17gb|AC129602.3| Mus musculus BAC clone RP23-37L24 from 16, comple... 40 6.2
18gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, com... 40 6.2
19emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica ser... 40 6.2
20gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence 40 6.2
21gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cance... 40 6.2
22gb|AC097348.5| Homo sapiens X BAC RP11-489K4 (Roswell Park Cance... 40 6.2
23gb|DP000032.1| Felis catus target 116 genomic scaffold 40 6.2
24gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.2
25gb|AC093759.3| Homo sapiens BAC clone RP11-67M1 from 4, complete... 40 6.2
26emb|X68824.1|ECPREP E.coli plasmid (IncHI1 group) rep gene for r... 40 6.2
27gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, compl... 40 6.2
28ref|NM_211590.1| Eremothecium gossypii AGL139Wp (AGL139W), mRNA 40 6.2
29gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complet... 40 6.2
30gb|AC124735.4| Mus musculus BAC clone RP23-310O18 from 5, comple... 40 6.2 
>gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complete cds
          Length = 3338

 Score =  904 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Minus

                                                                        
Query: 5    ctgaagtgacctttatttcagtatggcagaaaggaatcaaacacacaatgcactgttcca 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3316 ctgaagtgacctttatttcagtatggcagaaaggaatcaaacacacaatgcactgttcca 3257

                                                                        
Query: 65   gattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctccc 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3256 gattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctccc 3197

                                                                        
Query: 125  tgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcctg 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3196 tgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcctg 3137

                                                                        
Query: 185  ctgtttcatcttatcagcctatatgtactgtacatacccgcagcagagcttttgcttgca 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3136 ctgtttcatcttatcagcctatatgtactgtacatacccgcagcagagcttttgcttgca 3077

                                                                        
Query: 245  acagcggggtgaatgctatctagactgggacccagatatggtgacaaaatcataattact 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3076 acagcggggtgaatgctatctagactgggacccagatatggtgacaaaatcataattact 3017

                                                                        
Query: 305  ccttattcacacttggtggatgacaaccccggggtagagatgtgagatgtgcggttcacc 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3016 ccttattcacacttggtggatgacaaccccggggtagagatgtgagatgtgcggttcacc 2957

                                                                        
Query: 365  gatataaagatatttcatagggtacatgattgctcgctgtctcctgatgtgaagggatta 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2956 gatataaagatatttcatagggtacatgattgctcgctgtctcctgatgtgaagggatta 2897

                                                
Query: 425  ctagcctttgcaatgtcttcaggtagctagttaatt 460
            ||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ctagcctttgcaatgtcttcaggtagctagttaatt 2861
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>gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds, alternatively
            spliced
          Length = 3050

 Score =  264 bits (133), Expect = 2e-67
 Identities = 164/175 (93%), Gaps = 7/175 (4%)
 Strand = Plus / Minus

                                                                        
Query: 286  tgacaaaatcataattactccttattcacacttggtggatgacaaccccggggtagagat 345
            ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 3017 tgacaaaatcataattactgcttattcacacttggtgggtgacaaccccggggtagagat 2958

                                                                        
Query: 346  gtgagatgtgcggttcaccgatataaagatatttcatagggtacatgattgctcgctgtc 405
            |||       ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2957 gtg-------cggttcaccgatataaagatatttcatagggtacatggttgctcgctgtc 2905

                                                                   
Query: 406  tcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagttaatt 460
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2904 tcctgatgtgaagggattacaagcctttgcaatgtcttcaggtagctagttaatt 2850
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>ref|NM_196630.1| Oryza sativa (japonica cultivar-group) putative enhanced disease
           resistance protein (OSJNBa0073D04.42), mRNA
          Length = 516

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 399 cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 457
           |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 477 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 419
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>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04,
              complete sequence
          Length = 155372

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                         
Query: 399    cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 457
              |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 153285 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 153343
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>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            nbxb0019M20, complete sequence
          Length = 139421

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                       
Query: 399  cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 457
            |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 7914 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 7972
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 399      cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 457
                |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 14828136 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 14828194
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 399      cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 457
                |||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 14836377 cgctgtctcctgatgacaagggattactagcctttgcaatgtattcagatagctagtta 14836435
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>dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079M14, full
            insert sequence
          Length = 3394

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                       
Query: 399  cgctgtctcctgatgtgaagggattactagcctttgcaatgtcttcaggtagctagtta 457
            |||||||||||||||  ||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 2976 cgctgtctcctgatgacaagggattacttgcctttgcaatgtattcagatagctagtta 2918
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>gb|AC122747.11| Mus musculus chromosome 9, clone RP23-217J11, complete sequence
          Length = 195755

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 28    tggcagaaaggaatcaaacaca 49
             ||||||||||||||||||||||
Sbjct: 64007 tggcagaaaggaatcaaacaca 64028
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>emb|BX070512.1|CNS09QKK Single read from an extremity of a full-length cDNA clone made from
            Anopheles gambiae total adult females. 5-PRIME end of
            clone FK0AAC7CE11 of strain 6-9 of Anopheles gambiae
            (African malaria mosquito)
          Length = 1038

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 203  ctatatgtactgtacataccc 223
            |||||||||||||||||||||
Sbjct: 992  ctatatgtactgtacataccc 1012
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>gb|AC167141.2| Mus musculus BAC clone RP23-313L4 from chromosome 16, complete sequence
          Length = 192972

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   tatggtgacaaaatcataat 300
             ||||||||||||||||||||
Sbjct: 86127 tatggtgacaaaatcataat 86146
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>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence
          Length = 210968

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   acaaaatcataattactcct 307
             ||||||||||||||||||||
Sbjct: 94714 acaaaatcataattactcct 94733
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>gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosome 19, complete sequence
          Length = 227154

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 16     tttatttcagtatggcagaaagga 39
              ||||||||||||||||| ||||||
Sbjct: 170427 tttatttcagtatggcacaaagga 170404
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>gb|AC124675.9| Mus musculus chromosome 15, clone RP24-88M7, complete sequence
          Length = 207904

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   atacccgcagcagagcttttgctt 241
             ||||||||||||||| ||||||||
Sbjct: 85804 atacccgcagcagaggttttgctt 85827
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>gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosome 9, complete sequence
          Length = 148114

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 160    aaactggtattgttttctcctcct 183
              |||||||||||||||||| |||||
Sbjct: 147762 aaactggtattgttttcttctcct 147739
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>gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete sequence
          Length = 205725

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 160    aaactggtattgttttctcctcct 183
              |||||||||||||||||| |||||
Sbjct: 187413 aaactggtattgttttcttctcct 187436
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>gb|AC129602.3| Mus musculus BAC clone RP23-37L24 from 16, complete sequence
          Length = 185729

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    tatggtgacaaaatcataat 300
              ||||||||||||||||||||
Sbjct: 120507 tatggtgacaaaatcataat 120526
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>gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, complete sequence
          Length = 232275

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    tataaagatatttcataggg 386
              ||||||||||||||||||||
Sbjct: 228202 tataaagatatttcataggg 228183
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>emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid
             pHCM1
          Length = 218160

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   tttgcaatgtcttcaggtag 450
             ||||||||||||||||||||
Sbjct: 29101 tttgcaatgtcttcaggtag 29082
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>gb|AF250878.1| Salmonella typhi R27 plasmid complete sequence
          Length = 180461

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   tttgcaatgtcttcaggtag 450
             ||||||||||||||||||||
Sbjct: 54604 tttgcaatgtcttcaggtag 54623
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>gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172457

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 53    tgcactgttccagattgccagcttatct 80
             |||| ||||||||||||| |||||||||
Sbjct: 16803 tgcagtgttccagattgcaagcttatct 16830
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>gb|AC097348.5| Homo sapiens X BAC RP11-489K4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 85293

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 53    tgcactgttccagattgccagcttatct 80
             |||| ||||||||||||| |||||||||
Sbjct: 16822 tgcagtgttccagattgcaagcttatct 16849
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>gb|DP000032.1| Felis catus target 116 genomic scaffold
          Length = 376810

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     tgcactgttccagattgcca 72
              ||||||||||||||||||||
Sbjct: 332851 tgcactgttccagattgcca 332832
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tttcagtatggcagaaagga 39
              ||||||||||||||||||||
Sbjct: 452731 tttcagtatggcagaaagga 452712
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>gb|AC093759.3| Homo sapiens BAC clone RP11-67M1 from 4, complete sequence
          Length = 177807

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     tgcactgttccagattgcca 72
              ||||||||||||||||||||
Sbjct: 110731 tgcactgttccagattgcca 110712
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>emb|X68824.1|ECPREP E.coli plasmid (IncHI1 group) rep gene for replication protein
          Length = 2390

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 431  tttgcaatgtcttcaggtag 450
            ||||||||||||||||||||
Sbjct: 1722 tttgcaatgtcttcaggtag 1703
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>gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, complete sequence
          Length = 233984

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 163    ctggtattgttttctcctcc 182
              ||||||||||||||||||||
Sbjct: 132846 ctggtattgttttctcctcc 132827
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>ref|NM_211590.1| Eremothecium gossypii AGL139Wp (AGL139W), mRNA
          Length = 2196

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   tttcagtatggcagaaagga 39
            ||||||||||||||||||||
Sbjct: 1266 tttcagtatggcagaaagga 1247
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>gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complete sequence
          Length = 190003

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   tataaagatatttcataggg 386
             ||||||||||||||||||||
Sbjct: 87088 tataaagatatttcataggg 87107
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>gb|AC124735.4| Mus musculus BAC clone RP23-310O18 from 5, complete sequence
          Length = 203527

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    atatggtgacaaaatcataa 299
              ||||||||||||||||||||
Sbjct: 181053 atatggtgacaaaatcataa 181034


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,030,280
Number of Sequences: 3902068
Number of extensions: 4030280
Number of successful extensions: 76590
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76494
Number of HSP's gapped (non-prelim): 96
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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