ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16h08 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 79.0 bits (193), Expect = 3e-15 Identities = 42/52 (80%), Positives = 45/52 (86%), Gaps = 1/52 (1%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAAE 192 VRKVKILKAPKFDLGKLMEVHGDY KED+G KLDRP DE + G +EVAAAE Sbjct: 211 VRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 76.6 bits (187), Expect = 1e-14 Identities = 38/50 (76%), Positives = 41/50 (82%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAAA 195 +RKVKILKAPKFD+GKLMEVHGDY EDVGVKLDRP +E P A EV A Sbjct: 211 IRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 72.8 bits (177), Expect = 2e-13 Identities = 34/49 (69%), Positives = 38/49 (77%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVAA 198 +RKVKILKAPKFDLGKLMEVHGDY ED+G KLDRP + V E + A Sbjct: 211 IRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 68.9 bits (167), Expect = 3e-12 Identities = 34/51 (66%), Positives = 40/51 (78%), Gaps = 1/51 (1%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 195 +RKVKILKAPKFDLGKLMEVHGDY EDVGVK+DRP + ++ E+ A Sbjct: 211 IRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 67.4 bits (163), Expect = 8e-12 Identities = 36/51 (70%), Positives = 40/51 (78%), Gaps = 1/51 (1%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPDGDEVIPGAEEVAAA 195 +RKVKILKAPKFDL KLMEVHGDY EDVGVK+DRP DEV+ E+ A Sbjct: 212 IRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 57.8 bits (138), Expect = 7e-09 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 249 +RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 209 IRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 48.5 bits (114), Expect = 4e-06 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 9/48 (18%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 48.5 bits (114), Expect = 4e-06 Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 9/48 (18%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ +D G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYE 258
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 48.1 bits (113), Expect = 5e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 48.1 bits (113), Expect = 5e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 48.1 bits (113), Expect = 5e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 48.1 bits (113), Expect = 5e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 256
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 48.1 bits (113), Expect = 5e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 208 VRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYE 253
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVERADGYE 256
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 7/46 (15%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ ++ G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 10/49 (20%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD----------YKEDVGVKLDRPDGDE 228 VRKVK+LK PKF+LGKLME+HG+ + D G K++R DG E Sbjct: 211 VRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGDTGAKVERADGYE 259
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 8/47 (17%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 228 + KVK+LK PKFD+GKLME+HG+ + G K+DR DG E Sbjct: 211 IHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGGEKVDRVDGYE 257
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 43.9 bits (102), Expect = 1e-04 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 8/47 (17%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD--------YKEDVGVKLDRPDGDE 228 +RKVK+LK P+FD+ KL+E+HGD G +DRP+G E Sbjct: 214 IRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEGAVIDRPEGYE 260
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/32 (65%), Positives = 26/32 (81%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 249 VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 211 VRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 42.0 bits (97), Expect = 4e-04 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 2/41 (4%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDRPDGDE 228 +RKVKI+K PK DLG+L ++HGD G K+DRPD E Sbjct: 209 IRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRPDDYE 249
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/32 (65%), Positives = 26/32 (81%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 249 VRKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 211 VRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 40.4 bits (93), Expect = 0.001 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD 276 +RKVK+LK P+FDL LME+HGD Sbjct: 214 IRKVKVLKKPRFDLSSLMELHGD 236
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD 276 VRKVK+LK PKFD+G LM +HG+ Sbjct: 211 VRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/23 (69%), Positives = 20/23 (86%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD 276 VRKVK+LK PKFD+G LM +HG+ Sbjct: 211 VRKVKLLKQPKFDVGALMALHGE 233
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 37.0 bits (84), Expect = 0.012 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Frame = -2 Query: 344 VRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPDGDEVI 222 +RKVK+LK PKFD G L+ +HG+ E+ G K+ D V+ Sbjct: 211 IRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGFKDVVL 252
>YR297_MIMIV (Q5UPY3) Hypothetical protein R297| Length = 168 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +2 Query: 77 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQNSDFY 184 ++Y+ NQP++L T+ P ++ + + + N +FY Sbjct: 80 KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115
>Y241_MYCGE (P47483) Hypothetical protein MG241| Length = 620 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = +2 Query: 77 QKYSRNQPSKLTTKFTTPRWHIYHLLDKKQQ---NSDFYFS 190 +KYS NQP KL+ T +Y L K++Q +DF+F+ Sbjct: 322 EKYSTNQPQKLSLNST-----VYVLQTKQKQFFLKNDFFFN 357
>HATB_ARATH (Q9FJT8) Histone acetyltransferase type B catalytic subunit (EC| 2.3.1.48) (HAT B) Length = 467 Score = 27.7 bits (60), Expect = 7.3 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +2 Query: 122 TTPRWHIYHLLDKKQQNSD 178 T P WH+Y L+ KK++ D Sbjct: 203 TDPDWHLYLLIQKKEEKED 221
>KPCD_RAT (P09215) Protein kinase C delta type (EC 2.7.11.13) (nPKC-delta)| Length = 673 Score = 27.7 bits (60), Expect = 7.3 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Frame = -2 Query: 209 EVAAAE*KNRSRYFAASYL-------EDDICATWVS*TL*SVLMADFLSTSVDIPSQRST 51 +V AE K + RYFA YL +DD+ T V + ++ + T + Q Sbjct: 360 KVLLAELKGKERYFAIKYLKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLICTFQTKD 419 Query: 50 ILFCSCYFLDGG 15 LF FL+GG Sbjct: 420 HLFFVMEFLNGG 431
>DPO1_BACSU (O34996) DNA polymerase I (EC 2.7.7.7) (POL I)| Length = 880 Score = 27.3 bits (59), Expect = 9.6 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = -2 Query: 311 FDLGKLMEVHGDYKEDVGVKLDR-PDGDEVIPGAEEVAAAE*KNRSRYFAASYLEDDICA 135 FD GK HG +KE G + P+ E +P E+ A SRY Y DDI Sbjct: 60 FDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDA--YQISRYELEQYEADDIIG 117 Query: 134 T 132 T Sbjct: 118 T 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,083,281 Number of Sequences: 219361 Number of extensions: 642039 Number of successful extensions: 1564 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 1537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1561 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
