ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAR6G_HUMAN (Q9BYG4) Partitioning defective 6 homolog gamma (PAR... 34 0.078
2CAPP_THET8 (Q5SKL7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 30 1.5
3CAPP_THET2 (Q72L05) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 30 1.5
4KAP3_BOVIN (P31322) cAMP-dependent protein kinase type II-beta r... 28 4.3
5TSC10_YARLI (Q6CE86) 3-ketodihydrosphingosine reductase TSC10 (E... 28 5.6
6FBXW7_MOUSE (Q8VBV4) F-box/WD-repeat protein 7 (F-box and WD-40 ... 28 7.3

>PAR6G_HUMAN (Q9BYG4) Partitioning defective 6 homolog gamma (PAR-6 gamma)|
           (PAR6D)
          Length = 376

 Score = 34.3 bits (77), Expect = 0.078
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
 Frame = +3

Query: 12  KPSSTESMYTTAKQQHHHDNDDRPLL-------LLILKHSTRLCEPTARSISP--RVFPE 164
           KP   E  Y      HH  N D  +        LL + +    C+  + S +P  RVF +
Sbjct: 38  KPGKFEDFYKLVVHTHHISNSDVTIGYADVHGDLLPINNDDNFCKAVS-SANPLLRVFIQ 96

Query: 165 ARSYSGRGCAGAGLLCR 215
            R  + RG  GAG LCR
Sbjct: 97  KREEAERGSLGAGSLCR 113



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>CAPP_THET8 (Q5SKL7) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 858

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -2

Query: 323 QALANVSDEVQGGPPSYFFACAGTSTDDRALN*GGKPAKKTSTSTAPA*IRPRFR 159
           +AL+ V +EV  G P YFF   GTST       GG PA +   S  P  +  R R
Sbjct: 547 EALSRVGEEV--GLPVYFFHGRGTSTAR-----GGGPAGRAIASLPPRSVGRRIR 594



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>CAPP_THET2 (Q72L05) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 858

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = -2

Query: 323 QALANVSDEVQGGPPSYFFACAGTSTDDRALN*GGKPAKKTSTSTAPA*IRPRFR 159
           +AL+ V +EV  G P YFF   GTST       GG PA +   S  P  +  R R
Sbjct: 547 EALSRVGEEV--GLPVYFFHGRGTSTAR-----GGGPAGRAIASLPPRSVGRRIR 594



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>KAP3_BOVIN (P31322) cAMP-dependent protein kinase type II-beta regulatory|
           subunit
          Length = 417

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 84  LLLLILKHSTRLCEPTARSISPRVFPEARSYSGRGCAGAG 203
           LL   L+H TRL E   R  + R   E R++   G AG G
Sbjct: 27  LLEFALQHFTRLQEENERKGTARFGHEGRTWGDAGAAGGG 66



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>TSC10_YARLI (Q6CE86) 3-ketodihydrosphingosine reductase TSC10 (EC 1.1.1.102)|
           (3-dehydrosphinganine reductase) (KDS reductase)
          Length = 372

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 347 TADIVRLIQALANVSDEVQGGPPSYFFACAGTS 249
           +AD+ +  +A+   S+E    PP   F+CAG +
Sbjct: 121 SADLTKEEEAIRVFSEETMPAPPDVIFSCAGAA 153



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>FBXW7_MOUSE (Q8VBV4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein|
           7) (F-box protein FBW7) (F-box protein Fbxw6)
           (F-box-WD40 repeat protein 6) (SEL-10)
          Length = 629

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 164 SAVLFRPGLCWCWSSLPAFPLNSAP 238
           S+VL    +CWCW  L   PL + P
Sbjct: 7   SSVLVLSCVCWCWGVLLPVPLPNLP 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,060,412
Number of Sequences: 219361
Number of extensions: 648541
Number of successful extensions: 1702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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