>ref|XM_725688.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02850)
            partial mRNA
          Length = 3057

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 45   agaaaaatatgcagaaaagag 65
            |||||||||||||||||||||
Sbjct: 987  agaaaaatatgcagaaaagag 1007



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   gaaaaatatgcagaaaagag 65
            ||||||||||||||||||||
Sbjct: 1012 gaaaaatatgcagaaaagag 1031

>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete
             sequence
          Length = 203169

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    cacacataagtagaaaaatat 54
             |||||||||||||||||||||
Sbjct: 25523 cacacataagtagaaaaatat 25543

>gb|AC079271.4| Homo sapiens chromosome 10 clone RP11-455I1, complete sequence
          Length = 200476

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 34     cacacataagtagaaaaatat 54
              |||||||||||||||||||||
Sbjct: 179362 cacacataagtagaaaaatat 179382

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 246     taaggattttttctctagctgaaac 270
               ||||||||||||||||| |||||||
Sbjct: 4560464 taaggattttttctctacctgaaac 4560440

>gb|AY253318.1| HIV-1 isolate 01TZA306 from Tanzania gag protein (gag) and pol
            protein (pol) genes, partial cds; and vif protein (vif),
            vpr protein (vpr), tat protein (tat), rev protein (rev),
            vpu protein (vpu), envelope glycoprotein (env), and nef
            protein (nef) genes, complete cds
          Length = 8737

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  tttctctagctgaaacaaca 274
            ||||||||||||||||||||
Sbjct: 3127 tttctctagctgaaacaaca 3146

>emb|CR762443.6| Zebrafish DNA sequence from clone DKEY-3A5 in linkage group 10, complete
              sequence
          Length = 213185

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     agaaaaaataacaagtgaaa 108
              ||||||||||||||||||||
Sbjct: 189920 agaaaaaataacaagtgaaa 189939

>gb|AC130891.4| Homo sapiens 12 BAC RP11-97F22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 32143

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ccagtagttattattctcca 215
             ||||||||||||||||||||
Sbjct: 19111 ccagtagttattattctcca 19130

>emb|AL136080.6| Human DNA sequence from clone RP11-448E12 on chromosome Xq22.1-23
             Contains part of the COL4A6 gene for collagen type IV
             alpha 6, complete sequence
          Length = 116106

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    atgcagaaaagagaacaggt 72
             ||||||||||||||||||||
Sbjct: 27550 atgcagaaaagagaacaggt 27531

>emb|BX957219.1| Methanococcus maripaludis S2 complete genome; segment 1/5
          Length = 345730

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    agaaaaatatgcagaaaaga 64
             ||||||||||||||||||||
Sbjct: 20183 agaaaaatatgcagaaaaga 20164

>gb|AC140121.4| Homo sapiens 12 BAC RP13-86N24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39373

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   ccagtagttattattctcca 215
             ||||||||||||||||||||
Sbjct: 19842 ccagtagttattattctcca 19823

>emb|CR361547.8| Zebrafish DNA sequence from clone CH211-22K7 in linkage group 4
             Contains three novel genes and six CpG islands, complete
             sequence
          Length = 168908

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    ggccttgaatcacacataag 43
             ||||||||||||||||||||
Sbjct: 64762 ggccttgaatcacacataag 64743

>gb|AC108497.1| Caenorhabditis briggsae cosmid CB010P02, complete sequence
          Length = 88191

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    agaaaaaataacaagtgaaa 108
             ||||||||||||||||||||
Sbjct: 49272 agaaaaaataacaagtgaaa 49291

>gb|DQ011177.1| HIV-1 isolate 04ZASK136B1 from South Africa, complete genome
          Length = 9042

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  tttctctagctgaaacaaca 274
            ||||||||||||||||||||
Sbjct: 3367 tttctctagctgaaacaaca 3386

>gb|DQ011166.1| HIV-1 isolate 04ZASK135B1 from South Africa, complete genome
          Length = 9073

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  tttctctagctgaaacaaca 274
            ||||||||||||||||||||
Sbjct: 3340 tttctctagctgaaacaaca 3359

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 48       aaaatatgcagaaaagagaa 67
                ||||||||||||||||||||
Sbjct: 32483466 aaaatatgcagaaaagagaa 32483485

>gb|AC068193.7| Homo sapiens BAC clone RP11-103P16 from 2, complete sequence
          Length = 170059

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     acataagtagaaaaatatgc 56
              ||||||||||||||||||||
Sbjct: 105769 acataagtagaaaaatatgc 105788

>ref|XM_222171.3| PREDICTED: Rattus norvegicus anaphase promoting complex subunit 7
           (predicted) (Anapc7_predicted), mRNA
          Length = 1898

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 245 gtaaggattttttctctagc 264
           ||||||||||||||||||||
Sbjct: 895 gtaaggattttttctctagc 876

>gb|AC015936.14| Homo sapiens chromosome 17, clone CTD-2534I21, complete sequence
          Length = 203401

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     tttctcttagccaaggagaaaaaa 96
              |||||||| |||||||||||||||
Sbjct: 190983 tttctctttgccaaggagaaaaaa 191006

>dbj|AP004080.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1079_F11
          Length = 122402

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aaaatatgcagaaaagagaa 67
             ||||||||||||||||||||
Sbjct: 86859 aaaatatgcagaaaagagaa 86878

>gb|AC116493.10| Homo sapiens chromosome 17, clone CTD-3147F3, complete sequence
          Length = 94420

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 73    tttctcttagccaaggagaaaaaa 96
             |||||||| |||||||||||||||
Sbjct: 84582 tttctctttgccaaggagaaaaaa 84559

>emb|BX681417.10| Zebrafish DNA sequence from clone DKEY-161L11 in linkage group 2,
             complete sequence
          Length = 233760

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    atatgcagaaaagagaacaggttt 74
             |||||||| |||||||||||||||
Sbjct: 50709 atatgcagtaaagagaacaggttt 50732

>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 264     ctgaaacaacatcagctaat 283
               ||||||||||||||||||||
Sbjct: 1218688 ctgaaacaacatcagctaat 1218707

>gb|AC002349.1|AC002349 Homo sapiens Xp22 PAC RPCI1-167A22 (from Roswell Park Cancer Center)
             complete sequence
          Length = 159863

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    gaaaaaataacaagtgaaag 109
             ||||||||||||||||||||
Sbjct: 71616 gaaaaaataacaagtgaaag 71635


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,840,475
Number of Sequences: 3902068
Number of extensions: 3840475
Number of successful extensions: 69006
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68893
Number of HSP's gapped (non-prelim): 113
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)