Clone Name | rbastl16h04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome 13, complete sequence Length = 157531 Score = 42.1 bits (21), Expect = 0.50 Identities = 24/25 (96%) Strand = Plus / Minus Query: 87 acccccaccccaccacaaataaaat 111 |||||||||||||| |||||||||| Sbjct: 75543 acccccaccccaccccaaataaaat 75519
>emb|AL691457.14| Mouse DNA sequence from clone RP23-17M4 on chromosome 11 Contains the 3' end of a novel gene, complete sequence Length = 162777 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 ttctacaaacccccacccca 98 |||||||||||||||||||| Sbjct: 153252 ttctacaaacccccacccca 153233
>gb|AC009507.3| Homo sapiens BAC clone RP11-543L11 from 2, complete sequence Length = 122213 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cccccaccccaccacaaata 107 |||||||||||||||||||| Sbjct: 26226 cccccaccccaccacaaata 26207
>gb|AC092623.2| Homo sapiens BAC clone RP11-260E12 from 2, complete sequence Length = 172344 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 aacccccaccccaccacaaa 105 |||||||||||||||||||| Sbjct: 16323 aacccccaccccaccacaaa 16304
>gb|AC165353.4| Mus musculus BAC clone RP23-167C2 from chromosome 3, complete sequence Length = 198393 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 ctcgtggctattattttta 69 ||||||||||||||||||| Sbjct: 153209 ctcgtggctattattttta 153191
>ref|XM_467482.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4672 Score = 38.2 bits (19), Expect = 7.8 Identities = 34/39 (87%) Strand = Plus / Minus Query: 101 acaaataaaattactctgccactatggggacgtgacaat 139 ||||| |||||||||||||||| ||| | ||||||||| Sbjct: 4520 acaaacaaaattactctgccaccatgctggcgtgacaat 4482
>gb|AY584531.1| Helicobacter pylori plasmid pAL202, complete sequence Length = 12120 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 ggctattatttttatggca 74 ||||||||||||||||||| Sbjct: 2784 ggctattatttttatggca 2802
>gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, complete sequence Length = 188507 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 83 acaaacccccaccccacca 101 ||||||||||||||||||| Sbjct: 75051 acaaacccccaccccacca 75033
>gb|AC131765.3| Mus musculus BAC clone RP24-240I9 from chromosome 1, complete sequence Length = 152666 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 atttttatggcactcattc 81 ||||||||||||||||||| Sbjct: 131429 atttttatggcactcattc 131411
>ref|XM_801876.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511111.30) partial mRNA Length = 2325 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 tcgtggctattatttttat 70 ||||||||||||||||||| Sbjct: 1451 tcgtggctattatttttat 1433
>gb|AC125518.3| Mus musculus BAC clone RP24-267E6 from chromosome 1, complete sequence Length = 174190 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 atttttatggcactcattc 81 ||||||||||||||||||| Sbjct: 22366 atttttatggcactcattc 22348
>gb|AC123935.4| Mus musculus BAC clone RP23-354J3 from chromosome 13, complete sequence Length = 219370 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 cccccaccccaccacaaataaaa 110 ||||||||||||| ||||||||| Sbjct: 76768 cccccaccccaccccaaataaaa 76746
>ref|XM_807635.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507715.100) partial mRNA Length = 1273 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 tcgtggctattatttttat 70 ||||||||||||||||||| Sbjct: 399 tcgtggctattatttttat 381
>gb|AF469112.1| Helicobacter pylori plasmid pHel4 complete sequence Length = 10970 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 ggctattatttttatggca 74 ||||||||||||||||||| Sbjct: 9051 ggctattatttttatggca 9069
>gb|AC158622.4| Mus musculus 10 BAC RP23-292G1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 232339 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 aaataaaattactctgcca 121 ||||||||||||||||||| Sbjct: 29212 aaataaaattactctgcca 29194
>emb|AJ852426.1| Mus musculus domesticus VpreB1 gene and Lambda5 gene Length = 18322 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 aaacccccaccccaccaca 103 ||||||||||||||||||| Sbjct: 6360 aaacccccaccccaccaca 6342
>gb|AC157019.8| Mus musculus 10 BAC RP24-377N13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 233155 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 tctacaaacccccacccca 98 ||||||||||||||||||| Sbjct: 166502 tctacaaacccccacccca 166520
>emb|AL596255.17| Mouse DNA sequence from clone RP23-6K20 on chromosome 11 Contains the 3' end of the Myh13 gene for skeletal muscle myosin heavy polypeptide 13, the 5' end of the Gas7 gene for growth arrest specific 7, a novel gene and a CpG island, complete sequence Length = 251096 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 88 cccccaccccaccacaaat 106 ||||||||||||||||||| Sbjct: 137954 cccccaccccaccacaaat 137936
>ref|NM_001000253.1| Rattus norvegicus olfactory receptor 340 (predicted) (Olr340_predicted), mRNA Length = 945 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 accccaccacaaataaaat 111 ||||||||||||||||||| Sbjct: 607 accccaccacaaataaaat 589
>gb|AC117372.2| Homo sapiens 12 BAC RP11-266O15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165301 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 aaataaaattactctgcca 121 ||||||||||||||||||| Sbjct: 127232 aaataaaattactctgcca 127250
>gb|AC121336.3| Homo sapiens 12 BAC RP11-134P3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171437 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 91 ccaccccaccacaaataaaatta 113 |||||||||||||| |||||||| Sbjct: 55285 ccaccccaccacaattaaaatta 55263
>gb|AC154646.2| Mus musculus BAC clone RP23-283B12 from chromosome 14, complete sequence Length = 189102 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 cccccaccccaccacaaataaaa 110 ||||||||||||| ||||||||| Sbjct: 1995 cccccaccccaccccaaataaaa 1973
>emb|CR386768.1| Gallus gallus finished cDNA, clone ChEST423g17 Length = 699 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 138 atccctatgggccaaaaaa 156 ||||||||||||||||||| Sbjct: 62 atccctatgggccaaaaaa 44
>gb|U19464.1|PTU19464 Paramecium tetraurelia outer arm dynein beta heavy chain gene, complete cds Length = 16556 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gtggctattatttttatgg 72 ||||||||||||||||||| Sbjct: 395 gtggctattatttttatgg 377
>gb|AC007351.40|AC007351 Homo sapiens 12 BAC RP11-492N15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 195501 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 ataaaattactctgccact 123 ||||||||||||||||||| Sbjct: 19791 ataaaattactctgccact 19773
>dbj|AB205158.1| Geotria australis CNP mRNA for C-type natriuretic peptide, complete cds Length = 1056 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 caaacccccaccccaccac 102 ||||||||||||||||||| Sbjct: 628 caaacccccaccccaccac 646
>gb|AC013423.6|AC013423 Drosophila melanogaster, chromosome 2R, region 47D-47E, BAC clone BACR09B12, complete sequence Length = 170341 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 attatttttatggcactca 78 ||||||||||||||||||| Sbjct: 42384 attatttttatggcactca 42402
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.8 Identities = 34/39 (87%) Strand = Plus / Plus Query: 101 acaaataaaattactctgccactatggggacgtgacaat 139 ||||| |||||||||||||||| ||| | ||||||||| Sbjct: 29782267 acaaacaaaattactctgccaccatgctggcgtgacaat 29782305
>gb|AC008187.6|AC008187 Drosophila melanogaster, chromosome 2R, region 47D-47E, BAC clone BACR13D20, complete sequence Length = 168417 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 attatttttatggcactca 78 ||||||||||||||||||| Sbjct: 160728 attatttttatggcactca 160746
>gb|AC154436.2| Mus musculus BAC clone RP24-192B24 from chromosome 14, complete sequence Length = 180476 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 cccccaccccaccacaaataaaa 110 ||||||||||||| ||||||||| Sbjct: 166978 cccccaccccaccccaaataaaa 166956
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 38.2 bits (19), Expect = 7.8 Identities = 34/39 (87%) Strand = Plus / Plus Query: 101 acaaataaaattactctgccactatggggacgtgacaat 139 ||||| |||||||||||||||| ||| | ||||||||| Sbjct: 38612 acaaacaaaattactctgccaccatgctggcgtgacaat 38650
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1191_G08 Length = 172832 Score = 38.2 bits (19), Expect = 7.8 Identities = 34/39 (87%) Strand = Plus / Plus Query: 101 acaaataaaattactctgccactatggggacgtgacaat 139 ||||| |||||||||||||||| ||| | ||||||||| Sbjct: 151246 acaaacaaaattactctgccaccatgctggcgtgacaat 151284
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 caccacaaataaaattact 115 ||||||||||||||||||| Sbjct: 2682352 caccacaaataaaattact 2682334
>emb|AL807827.11| Zebrafish DNA sequence from clone CH211-220J6, complete sequence Length = 199141 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 catcaatcagcagtcccac 25 ||||||||||||||||||| Sbjct: 95212 catcaatcagcagtcccac 95230
>dbj|AK121612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043J17, full insert sequence Length = 4673 Score = 38.2 bits (19), Expect = 7.8 Identities = 34/39 (87%) Strand = Plus / Minus Query: 101 acaaataaaattactctgccactatggggacgtgacaat 139 ||||| |||||||||||||||| ||| | ||||||||| Sbjct: 4521 acaaacaaaattactctgccaccatgctggcgtgacaat 4483
>gb|AC108828.17| Mus musculus chromosome 5, clone RP23-153H17, complete sequence Length = 218103 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 130 acgtgacaatccctatgggccaa 152 |||||||| |||||||||||||| Sbjct: 80847 acgtgacattccctatgggccaa 80825
>gb|AE003826.4| Drosophila melanogaster chromosome 2R, section 24 of 73 of the complete sequence Length = 310108 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 attatttttatggcactca 78 ||||||||||||||||||| Sbjct: 16678 attatttttatggcactca 16696
>emb|CR925730.6| Zebrafish DNA sequence from clone DKEY-277M11 in linkage group 10, complete sequence Length = 34855 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 acccccaccccaccacaaa 105 ||||||||||||||||||| Sbjct: 8759 acccccaccccaccacaaa 8741
>gb|AC132137.3| Mus musculus BAC clone RP23-153E2 from 3, complete sequence Length = 196413 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 ctcgtggctattattttta 69 ||||||||||||||||||| Sbjct: 166565 ctcgtggctattattttta 166583
>gb|AC149591.5| Mus musculus BAC clone RP23-332I9 from 18, complete sequence Length = 231381 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 aaaattactctgccactat 125 ||||||||||||||||||| Sbjct: 138760 aaaattactctgccactat 138742
>emb|CR962121.2| Medicago truncatula chromosome 5 clone mte1-77f5, COMPLETE SEQUENCE Length = 107392 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 cccccaccccaccacaaat 106 ||||||||||||||||||| Sbjct: 101167 cccccaccccaccacaaat 101185
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 38.2 bits (19), Expect = 7.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 66 tttatggcactcattctacaaac 88 |||||||||||||| |||||||| Sbjct: 367154 tttatggcactcatactacaaac 367176
>emb|AL356807.3|CNS05TDP Human chromosome 14 DNA sequence BAC C-2335K5 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 124620 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 tttgccttcaccccattct 52 ||||||||||||||||||| Sbjct: 99286 tttgccttcaccccattct 99268 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,094,173 Number of Sequences: 3902068 Number of extensions: 2094173 Number of successful extensions: 151782 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151604 Number of HSP's gapped (non-prelim): 178 length of query: 161 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 139 effective length of database: 17,147,199,772 effective search space: 2383460768308 effective search space used: 2383460768308 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)