>HISX_GEOSL (P60859) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 429

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 294 TLDI*IALSNESRVNPEHL-CVLLSPYEKASRYKCLLSTLLGHCSPE 157
           +LD  IA SN  R+ PEHL   + +P+E   R K   +  LGH +PE
Sbjct: 313 SLDEAIAFSN--RIAPEHLELAVANPFEILPRIKNAGAIFLGHFTPE 357

>EUTR_ECOLI (P36547) HTH-type transcriptional regulator eutR (Ethanolamine|
           operon regulatory protein)
          Length = 350

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 19  GFVDRL*VTYCSQPQNLHQ 75
           GFV +   T+C  P+NLHQ
Sbjct: 184 GFVQQALATFCENPENLHQ 202

>MMP9_RAT (P50282) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 708

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 304 NSSREYGFAPSQSIYTVH 357
           ++ R+YGF PS+++YT H
Sbjct: 264 DTDRKYGFCPSENLYTEH 281

>GLGX_SHIFL (Q83J89) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon|
           protein glgX)
          Length = 657

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -1

Query: 176 LVTAH-----QKTVCFGGKRNEASGRSSRFSKQN 90
           LVTAH     +  VCF  K NEA+G  +R    N
Sbjct: 438 LVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNN 471

>GLGX_ECOLI (P15067) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon|
           protein glgX)
          Length = 657

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -1

Query: 176 LVTAH-----QKTVCFGGKRNEASGRSSRFSKQN 90
           LVTAH     +  VCF  K NEA+G  +R    N
Sbjct: 438 LVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNN 471

>GLGX_ECOL6 (Q8FCR8) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon|
           protein glgX)
          Length = 657

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -1

Query: 176 LVTAH-----QKTVCFGGKRNEASGRSSRFSKQN 90
           LVTAH     +  VCF  K NEA+G  +R    N
Sbjct: 438 LVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNN 471

>GLGX_ECO57 (Q8X6X8) Glycogen debranching enzyme (EC 3.2.1.-) (Glycogen operon|
           protein glgX)
          Length = 657

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -1

Query: 176 LVTAH-----QKTVCFGGKRNEASGRSSRFSKQN 90
           LVTAH     +  VCF  K NEA+G  +R    N
Sbjct: 438 LVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNN 471

>HISX_THIDN (Q30TA4) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 430

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 297 LTLDI*IALSNESRVNPEHLCVL-LSPYEKASRYKCLLSTLLGHCSPE 157
           +T D+  A+   + + PEHL V  LSP+E     K   +  LGH +PE
Sbjct: 310 VTSDMQEAIDLMNEIAPEHLEVATLSPFELLPLIKHAGAIFLGHNTPE 357

>RECR_MANSM (Q65SE7) Recombination protein recR|
          Length = 200

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 288 DI*IALSNESRVNPEHLCVLLSP-----YEKASRYKCLLSTLLGHCSPEDGLFRRK 136
           DI     N  R N   LCV+  P      E+  ++      L+GH SP DG+  R+
Sbjct: 67  DICSICDNPRRQNSRLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPRE 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,442,664
Number of Sequences: 219361
Number of extensions: 906712
Number of successful extensions: 1828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)