ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_181994.2| Caenorhabditis elegans Acyl CoA DeHydrogenase f... 42 1.2
2gb|AC006625.1| Caenorhabditis elegans cosmid C55B7, complete seq... 42 1.2
3gb|K01255.1|HEAUPTKA H.parainfluenza DNA with putative 'uptake s... 42 1.2
4gb|AF420087.1| Thamnophis atratus NADH dehydrogenase subunit 2 g... 40 4.8
5emb|BX510366.5| Zebrafish DNA sequence from clone DKEY-189P24 in... 40 4.8
6gb|AF078737.1|AF078737 Caldicellulosiruptor sp. Tok7B.1 XynA (xy... 40 4.8
7emb|CT009515.16| Mouse DNA sequence from clone RP23-117H6 on chr... 40 4.8

>ref|NM_181994.2| Caenorhabditis elegans Acyl CoA DeHydrogenase family member (acdh-1)
            (acdh-1) mRNA, complete cds
          Length = 1402

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 235  acacaaatgttcagggtttac 255
            |||||||||||||||||||||
Sbjct: 980  acacaaatgttcagggtttac 1000



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>gb|AC006625.1| Caenorhabditis elegans cosmid C55B7, complete sequence
          Length = 39373

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   acacaaatgttcagggtttac 255
             |||||||||||||||||||||
Sbjct: 16971 acacaaatgttcagggtttac 16991



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>gb|K01255.1|HEAUPTKA H.parainfluenza DNA with putative 'uptake site'; fragment A
          Length = 125

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 18 tggctttgtagataggttgtg 38
          |||||||||||||||||||||
Sbjct: 22 tggctttgtagataggttgtg 42



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>gb|AF420087.1| Thamnophis atratus NADH dehydrogenase subunit 2 gene, complete cds;
           mitochondrial gene for mitochondrial product
          Length = 1029

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  catactgttctcagccacaa 63
           ||||||||||||||||||||
Sbjct: 207 catactgttctcagccacaa 226



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>emb|BX510366.5| Zebrafish DNA sequence from clone DKEY-189P24 in linkage group 5,
             complete sequence
          Length = 179350

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   acagcaaaacacacaaatgt 244
             ||||||||||||||||||||
Sbjct: 64939 acagcaaaacacacaaatgt 64920



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>gb|AF078737.1|AF078737 Caldicellulosiruptor sp. Tok7B.1 XynA (xynA) and CelB (celB) genes,
             complete cds; and unknown genes
          Length = 11707

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 222   gagacagcaaaacacacaaatgtt 245
             |||| |||||||||||||||||||
Sbjct: 11070 gagatagcaaaacacacaaatgtt 11093



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>emb|CT009515.16| Mouse DNA sequence from clone RP23-117H6 on chromosome 14, complete
              sequence
          Length = 197196

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    aaacaaaccgtcttctggtg 164
              ||||||||||||||||||||
Sbjct: 164904 aaacaaaccgtcttctggtg 164923


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,696,645
Number of Sequences: 3902068
Number of extensions: 2696645
Number of successful extensions: 50215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50207
Number of HSP's gapped (non-prelim): 8
length of query: 359
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 337
effective length of database: 17,147,199,772
effective search space: 5778606323164
effective search space used: 5778606323164
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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