ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VC19_SWPVK (P32207) Protein C19 28 4.2
2MYC2_CRODU (Q9PWF3) Crotamine CRO2 precursor 28 7.2
3DPH1_YEAST (P40487) Diphthamide biosynthesis protein 1 28 7.2

>VC19_SWPVK (P32207) Protein C19|
          Length = 215

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 153 MQFYKNASCSSLISNGSLEKHSRMSNYKWFIYSRLYLST*FVVSSC 290
           M    N+     I N ++  +  ++N  WFI+S + ++  FV+  C
Sbjct: 152 MNSIMNSMNRRYIDNANIYNYLNLTNRPWFIFSIIIIAIIFVIGIC 197



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>MYC2_CRODU (Q9PWF3) Crotamine CRO2 precursor|
          Length = 65

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 19  INEWSTCYIGCHDPGYRNTIREKINLLPSS*NKFGSCKTKWKIRKC 156
           ++E    Y  CH  G     +EKI L PSS   FG    +W+ + C
Sbjct: 16  LSEPGNAYKQCHKKGGHCFPKEKICLPPSS--DFGKMDCRWRWKCC 59



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>DPH1_YEAST (P40487) Diphthamide biosynthesis protein 1|
          Length = 425

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 76  IREKINLLPSS*NKFGSCKTKWKIRKCNSIRM 171
           + E I LLPS+ N F   KT W IRK N+ R+
Sbjct: 65  LNEAIKLLPSNYN-FEIHKTVWNIRKYNAKRI 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,111,764
Number of Sequences: 219361
Number of extensions: 676254
Number of successful extensions: 1063
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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