ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
3dbj|AK066463.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
4dbj|AK060568.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
5emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230... 42 1.2
6gb|U40799.2| Caenorhabditis elegans cosmid F42C5, complete sequence 42 1.2
7dbj|AB208135.1| Procavia capensis DNA, AfroSINE locus Ma081 42 1.2
8gb|AC021646.35| Homo sapiens 12 BAC RP11-511B23 (Roswell Park Ca... 42 1.2
9gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 4.8
10gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome... 40 4.8
11gb|AC154528.2| Mus musculus BAC clone RP23-460I18 from chromosom... 40 4.8
12gb|AC136019.3| Mus musculus BAC clone RP24-404D22 from chromosom... 40 4.8
13gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, comp... 40 4.8
14gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, com... 40 4.8
15gb|AC123866.4| Mus musculus BAC clone RP23-124I3 from chromosome... 40 4.8
16gb|AC122461.3| Mus musculus BAC clone RP24-293D14 from chromosom... 40 4.8
17emb|CR392042.21| Zebrafish DNA sequence from clone CH211-129I21 ... 40 4.8
18gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome... 40 4.8
19emb|BX942815.11| Zebrafish DNA sequence from clone DKEY-26M3 in ... 40 4.8
20gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, comp... 40 4.8
21emb|AL031256.1|HS409O10 Human DNA sequence from clone RP3-409O10... 40 4.8
22gb|AC119044.6| Homo sapiens 12 BAC RP11-23J18 (Roswell Park Canc... 40 4.8
23emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 4.8
24emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 4.8
25gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosom... 40 4.8
26emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 b... 40 4.8
27emb|CR589943.13| Zebrafish DNA sequence from clone DKEYP-73C8 in... 40 4.8
28emb|BX572635.17| Zebrafish DNA sequence from clone CH211-235O23 ... 40 4.8
29emb|BX571664.8| Zebrafish DNA sequence from clone DKEYP-82H4 in ... 40 4.8
30dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 40 4.8
31gb|AC068062.7| Homo sapiens chromosome 10 clone RP11-519L15, com... 40 4.8
32gb|AC026123.24| Homo sapiens 16 BAC RP11-174D5 (Roswell Park Can... 40 4.8
33emb|BX548030.10| Zebrafish DNA sequence from clone CH211-194H8 i... 40 4.8
34ref|XM_391940.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 4.8
35emb|BX825886.1|CNS0A7NV Arabidopsis thaliana Full-length cDNA Co... 40 4.8
36gb|AC084058.6| Homo sapiens chromosome 16 clone CTD-2119F7, comp... 40 4.8
37gb|AC004010.1| Homo sapiens BAC clone GS1-99H8 from 12, complete... 40 4.8
38dbj|AP001304.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 4.8
39emb|CR450840.18| Zebrafish DNA sequence from clone CH211-261D9 i... 40 4.8 
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01,
              complete sequence
          Length = 142752

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 191    ttctaatggttccctagagaagcactctaggatgagt 227
              ||||||||||||||||| |||||  ||||||||||||
Sbjct: 124117 ttctaatggttccctagggaagctgtctaggatgagt 124153



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 145    atcaggaaatgcaattctataagaatgcaa 174
              |||| |||||||||||||| ||||||||||
Sbjct: 124065 atcaagaaatgcaattctagaagaatgcaa 124094
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 191      ttctaatggttccctagagaagcactctaggatgagt 227
                ||||||||||||||||| |||||  ||||||||||||
Sbjct: 13440654 ttctaatggttccctagggaagctgtctaggatgagt 13440690



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 145      atcaggaaatgcaattctataagaatgcaa 174
                |||| |||||||||||||| ||||||||||
Sbjct: 13440602 atcaagaaatgcaattctagaagaatgcaa 13440631
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>dbj|AK066463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065F17, full
            insert sequence
          Length = 3421

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 191  ttctaatggttccctagagaagcactctaggatgagt 227
            ||||||||||||||||| |||||  ||||||||||||
Sbjct: 3169 ttctaatggttccctagggaagctgtctaggatgagt 3133



 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 145  atcaggaaatgcaattctataagaatgcaa 174
            |||| |||||||||||||| ||||||||||
Sbjct: 3221 atcaagaaatgcaattctagaagaatgcaa 3192
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>dbj|AK060568.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-B05, full
           insert sequence
          Length = 238

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 145 atcaggaaatgcaattctataagaatgcaa 174
           |||| |||||||||||||| ||||||||||
Sbjct: 45  atcaagaaatgcaattctagaagaatgcaa 16
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>emb|CR937048.1|RN139I21 Rattus norvegicus chromosome 1 BAC CH230-139I21, complete sequence
          Length = 212885

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    attctataagaatgcaagttg 178
              |||||||||||||||||||||
Sbjct: 198744 attctataagaatgcaagttg 198764
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>gb|U40799.2| Caenorhabditis elegans cosmid F42C5, complete sequence
          Length = 41551

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     tataaatttttgataaatgaa 27
             |||||||||||||||||||||
Sbjct: 14981 tataaatttttgataaatgaa 14961
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>dbj|AB208135.1| Procavia capensis DNA, AfroSINE locus Ma081
          Length = 485

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 90  aaaccttttgccatcaagtta 110
           |||||||||||||||||||||
Sbjct: 245 aaaccttttgccatcaagtta 265
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>gb|AC021646.35| Homo sapiens 12 BAC RP11-511B23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 165089

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     taaatttttgataaatgaatg 29
             |||||||||||||||||||||
Sbjct: 81340 taaatttttgataaatgaatg 81360
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 9       taaatttttgataaatgaat 28
               ||||||||||||||||||||
Sbjct: 2432444 taaatttttgataaatgaat 2432425
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>gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence
          Length = 245260

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     acaattagagagaaaataaa 92
              ||||||||||||||||||||
Sbjct: 112735 acaattagagagaaaataaa 112754
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>gb|AC154528.2| Mus musculus BAC clone RP23-460I18 from chromosome 14, complete sequence
          Length = 207430

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    atgagtaactacaaatggtt 241
              ||||||||||||||||||||
Sbjct: 137960 atgagtaactacaaatggtt 137979
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>gb|AC136019.3| Mus musculus BAC clone RP24-404D22 from chromosome 14, complete
             sequence
          Length = 162787

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     ataaatttttgataaatgaa 27
             ||||||||||||||||||||
Sbjct: 31437 ataaatttttgataaatgaa 31418
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>gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, complete sequence
          Length = 203141

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    ttctataagaatgcaagttg 178
              ||||||||||||||||||||
Sbjct: 120397 ttctataagaatgcaagttg 120378
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>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence
          Length = 172617

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    gattgctttgttcatgacaa 339
              ||||||||||||||||||||
Sbjct: 134779 gattgctttgttcatgacaa 134798
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>gb|AC123866.4| Mus musculus BAC clone RP23-124I3 from chromosome 8, complete sequence
          Length = 217446

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    atcaagttagaataaatttg 121
              ||||||||||||||||||||
Sbjct: 197879 atcaagttagaataaatttg 197860
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>gb|AC122461.3| Mus musculus BAC clone RP24-293D14 from chromosome 12, complete
             sequence
          Length = 172126

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    acaattagagagaaaataaa 92
             ||||||||||||||||||||
Sbjct: 61541 acaattagagagaaaataaa 61522
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>emb|CR392042.21| Zebrafish DNA sequence from clone CH211-129I21 in linkage group 3,
              complete sequence
          Length = 190738

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     taggaacacaattagagaga 85
              ||||||||||||||||||||
Sbjct: 137378 taggaacacaattagagaga 137397
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>gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome 14, complete sequence
          Length = 159361

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     ataaatttttgataaatgaa 27
             ||||||||||||||||||||
Sbjct: 22433 ataaatttttgataaatgaa 22452
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>emb|BX942815.11| Zebrafish DNA sequence from clone DKEY-26M3 in linkage group 5,
            complete sequence
          Length = 155109

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   taggaacacaattagagaga 85
            ||||||||||||||||||||
Sbjct: 8576 taggaacacaattagagaga 8557
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>gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, complete sequence
          Length = 176916

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   gattgctttgttcatgacaa 339
             ||||||||||||||||||||
Sbjct: 70634 gattgctttgttcatgacaa 70615
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>emb|AL031256.1|HS409O10 Human DNA sequence from clone RP3-409O10 on chromosome 20q12 Contains
             CA repeat, GSS and STS, complete sequence
          Length = 117994

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ttccctagagaagcactcta 219
             ||||||||||||||||||||
Sbjct: 76128 ttccctagagaagcactcta 76147
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>gb|AC119044.6| Homo sapiens 12 BAC RP11-23J18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 108899

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      ataaatttttgataaatgaa 27
              ||||||||||||||||||||
Sbjct: 102003 ataaatttttgataaatgaa 101984
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 9       taaatttttgataaatgaat 28
               ||||||||||||||||||||
Sbjct: 2374720 taaatttttgataaatgaat 2374701
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 9       taaatttttgataaatgaat 28
               ||||||||||||||||||||
Sbjct: 2402305 taaatttttgataaatgaat 2402286
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>gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosome 8, complete
            sequence
          Length = 122811

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  atcaagttagaataaatttg 121
            ||||||||||||||||||||
Sbjct: 4559 atcaagttagaataaatttg 4540
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>emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 bp, chromosome 7
          Length = 281000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    ttctataagaatgcaagttg 178
              ||||||||||||||||||||
Sbjct: 102478 ttctataagaatgcaagttg 102497
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>emb|CR589943.13| Zebrafish DNA sequence from clone DKEYP-73C8 in linkage group 18,
           complete sequence
          Length = 179531

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  taggaacacaattagagaga 85
           ||||||||||||||||||||
Sbjct: 133 taggaacacaattagagaga 152
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>emb|BX572635.17| Zebrafish DNA sequence from clone CH211-235O23 in linkage group 2,
             complete sequence
          Length = 124717

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    taggaacacaattagagaga 85
             ||||||||||||||||||||
Sbjct: 51803 taggaacacaattagagaga 51784
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>emb|BX571664.8| Zebrafish DNA sequence from clone DKEYP-82H4 in linkage group 4,
             complete sequence
          Length = 204160

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    taggaacacaattagagaga 85
             ||||||||||||||||||||
Sbjct: 33888 taggaacacaattagagaga 33869
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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    gattgctttgttcatgacaa 339
              ||||||||||||||||||||
Sbjct: 163701 gattgctttgttcatgacaa 163720
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>gb|AC068062.7| Homo sapiens chromosome 10 clone RP11-519L15, complete sequence
          Length = 95976

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    ctataggaacacaattagagagaa 86
             ||||||||||||||||| ||||||
Sbjct: 52969 ctataggaacacaattaaagagaa 52992
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>gb|AC026123.24| Homo sapiens 16 BAC RP11-174D5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170088

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   aaatgcaattctataagaat 170
             ||||||||||||||||||||
Sbjct: 86055 aaatgcaattctataagaat 86036
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>emb|BX548030.10| Zebrafish DNA sequence from clone CH211-194H8 in linkage group 19,
              complete sequence
          Length = 140638

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     taggaacacaattagagaga 85
              ||||||||||||||||||||
Sbjct: 114566 taggaacacaattagagaga 114547
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>ref|XM_391940.2| PREDICTED: Apis mellifera similar to ENSANGP00000026324 (LOC408392),
            mRNA
          Length = 2873

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  caagttagaataaatttgga 123
            ||||||||||||||||||||
Sbjct: 2180 caagttagaataaatttgga 2199
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>emb|BX825886.1|CNS0A7NV Arabidopsis thaliana Full-length cDNA Complete sequence from
          clone GSLTSIL6ZE03 of Silique of strain col-0 of
          Arabidopsis thaliana (thale cress)
          Length = 591

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 71 acacaattagagagaaaata 90
          ||||||||||||||||||||
Sbjct: 34 acacaattagagagaaaata 53
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>gb|AC084058.6| Homo sapiens chromosome 16 clone CTD-2119F7, complete sequence
          Length = 160487

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    aaatgcaattctataagaat 170
              ||||||||||||||||||||
Sbjct: 136348 aaatgcaattctataagaat 136329
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>gb|AC004010.1| Homo sapiens BAC clone GS1-99H8 from 12, complete sequence
          Length = 140167

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      ataaatttttgataaatgaa 27
              ||||||||||||||||||||
Sbjct: 116446 ataaatttttgataaatgaa 116465
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>dbj|AP001304.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFD22
          Length = 33330

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    taaaccttttgccatcaagt 108
             ||||||||||||||||||||
Sbjct: 14758 taaaccttttgccatcaagt 14777
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>emb|CR450840.18| Zebrafish DNA sequence from clone CH211-261D9 in linkage group 14,
            complete sequence
          Length = 194617

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 66   taggaacacaattagagaga 85
            ||||||||||||||||||||
Sbjct: 2538 taggaacacaattagagaga 2557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,129,650
Number of Sequences: 3902068
Number of extensions: 4129650
Number of successful extensions: 91408
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91214
Number of HSP's gapped (non-prelim): 194
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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