ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete ge... 78 1e-11
2ref|XM_913045.2| PREDICTED: Mus musculus similar to putative phe... 42 0.80
3emb|CT009574.5| Mouse DNA sequence from clone RP23-140H11 on chr... 42 0.80
4gb|AC151273.2| Mus musculus BAC clone RP24-237J7 from chromosome... 42 0.80
5emb|BX842598.1| Neurospora crassa DNA linkage group II BAC clone... 42 0.80
6gb|BT012939.1| Lycopersicon esculentum clone 114107R, mRNA sequence 40 3.2
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.2
8emb|X63560.1|LESHKINP L.esculentum mRNA for shikimate kinase pre... 40 3.2
9emb|AL138972.1|DMBR25B3 Drosophila melanogaster BAC clone BACR25B3 40 3.2
10gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell ... 40 3.2
11gb|AC104054.6| Drosophila melanogaster X BAC RP98-21G11 (Roswell... 40 3.2
12gb|AC107964.4| Homo sapiens chromosome 8, clone CTD-2328I8, comp... 40 3.2
13gb|AY070857.1| Drosophila melanogaster GM10545 full length cDNA 40 3.2
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
15gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 3.2
16dbj|AK110807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.2
17gb|AE003424.2| Drosophila melanogaster chromosome X, section 8 o... 40 3.2

>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome
          Length = 452528

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                                 
Query: 137    acaactttattacatcatcctgatacatatcaacattagtagtctttttcg 187
              |||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 212855 acaactttctaacatcatcctgatacatatcaacattagaagtctttttcg 212805



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>ref|XM_913045.2| PREDICTED: Mus musculus similar to putative pheromone receptor
          (Go-VN5) (LOC637382), mRNA
          Length = 3168

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 39 tcctgttctccatcatgaaga 59
          |||||||||||||||||||||
Sbjct: 35 tcctgttctccatcatgaaga 55



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>emb|CT009574.5| Mouse DNA sequence from clone RP23-140H11 on chromosome 17, complete
              sequence
          Length = 204822

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     tcctgttctccatcatgaaga 59
              |||||||||||||||||||||
Sbjct: 138623 tcctgttctccatcatgaaga 138603



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>gb|AC151273.2| Mus musculus BAC clone RP24-237J7 from chromosome 17, complete sequence
          Length = 143288

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    tcctgttctccatcatgaaga 59
             |||||||||||||||||||||
Sbjct: 45613 tcctgttctccatcatgaaga 45633



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>emb|BX842598.1| Neurospora crassa DNA linkage group II BAC clone B8L10
          Length = 73541

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 182   ttttcggattttcaaaacttc 202
             |||||||||||||||||||||
Sbjct: 51064 ttttcggattttcaaaacttc 51084



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>gb|BT012939.1| Lycopersicon esculentum clone 114107R, mRNA sequence
          Length = 1303

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 gtgcactcttcagctctttc 228
           ||||||||||||||||||||
Sbjct: 33  gtgcactcttcagctctttc 52



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 83      tcattttcaagggttgatga 102
               ||||||||||||||||||||
Sbjct: 2821759 tcattttcaagggttgatga 2821740



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>emb|X63560.1|LESHKINP L.esculentum mRNA for shikimate kinase precursor
          Length = 1293

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 gtgcactcttcagctctttc 228
           ||||||||||||||||||||
Sbjct: 61  gtgcactcttcagctctttc 80



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>emb|AL138972.1|DMBR25B3 Drosophila melanogaster BAC clone BACR25B3
          Length = 154329

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   tttttcggattttcaaaact 200
             ||||||||||||||||||||
Sbjct: 65747 tttttcggattttcaaaact 65728



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>gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 191342

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   tttttcggattttcaaaact 200
             ||||||||||||||||||||
Sbjct: 20947 tttttcggattttcaaaact 20928



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>gb|AC104054.6| Drosophila melanogaster X BAC RP98-21G11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170347

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    tttttcggattttcaaaact 200
              ||||||||||||||||||||
Sbjct: 122085 tttttcggattttcaaaact 122066



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>gb|AC107964.4| Homo sapiens chromosome 8, clone CTD-2328I8, complete sequence
          Length = 138594

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    acctgaacaagaatatcatt 30
             ||||||||||||||||||||
Sbjct: 96680 acctgaacaagaatatcatt 96699



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>gb|AY070857.1| Drosophila melanogaster GM10545 full length cDNA
          Length = 1972

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 tttttcggattttcaaaact 200
           ||||||||||||||||||||
Sbjct: 788 tttttcggattttcaaaact 807



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 83      tcattttcaagggttgatga 102
               ||||||||||||||||||||
Sbjct: 2821870 tcattttcaagggttgatga 2821851



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>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0038D20, from chromosome 3, complete sequence
          Length = 165395

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    tcattttcaagggttgatga 102
             ||||||||||||||||||||
Sbjct: 93715 tcattttcaagggttgatga 93696



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>dbj|AK110807.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-F01, full
           insert sequence
          Length = 1400

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 83  tcattttcaagggttgatga 102
           ||||||||||||||||||||
Sbjct: 554 tcattttcaagggttgatga 535



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>gb|AE003424.2| Drosophila melanogaster chromosome X, section 8 of 74 of the complete
              sequence
          Length = 274777

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    tttttcggattttcaaaact 200
              ||||||||||||||||||||
Sbjct: 157415 tttttcggattttcaaaact 157396


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,325,175
Number of Sequences: 3902068
Number of extensions: 2325175
Number of successful extensions: 56378
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56330
Number of HSP's gapped (non-prelim): 48
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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