ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 49 4e-06
2LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 46 2e-05
3LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 46 3e-05
4LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 44 8e-05
5LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 39 0.004
6LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12) 32 0.30
7LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12) 31 0.67
8LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 31 0.88
9LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 30 1.5
10LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1) 30 1.5
11LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 30 1.5
12LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 30 1.5
13E74EA_DROME (P20105) Ecdysone-induced protein 74EF isoform A (ET... 30 2.0
14E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ET... 30 2.0
15KRA49_HUMAN (Q9BYQ8) Keratin-associated protein 4-9 (Keratin-ass... 30 2.0
16RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-) ... 29 2.6
17LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12) 29 2.6
18LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3) 28 4.4
19Y735_AGRT5 (Q8UHE7) Hypothetical RNA methyltransferase Atu0735/A... 28 4.4
20KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-ass... 28 5.7
21LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12) 28 7.4
22NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 7.4
23KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-ass... 28 7.4
24E74EF_DROVI (Q7M3M6) Ecdysone-induced protein 74EF (ETS-related ... 28 7.4
25NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 7.4
26SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP) 28 7.4
27SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP) 28 7.4
28CF208_HUMAN (Q9H8X3) Protein C6orf208 28 7.4
29KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-) 27 9.7
30ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator... 27 9.7
31ESPL1_HUMAN (Q14674) Separin (EC 3.4.22.49) (Separase) (Caspase-... 27 9.7

>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = -2

Query: 332 LYPNTSDHTGQAEGLTARGIPNSISI 255
           LYPNTSDH G A GLTA+GIPNSISI
Sbjct: 837 LYPNTSDHKGAAAGLTAKGIPNSISI 862



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>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/26 (76%), Positives = 24/26 (92%)
 Frame = -2

Query: 332 LYPNTSDHTGQAEGLTARGIPNSISI 255
           ++PNTSD+ G AEG+TARGIPNSISI
Sbjct: 838 MFPNTSDNKGAAEGITARGIPNSISI 863



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = -2

Query: 332 LYPNTSDHTGQAEGLTARGIPNSISI 255
           LYPNTSD TG A G+TA+GIPNSISI
Sbjct: 841 LYPNTSDVTGAAAGITAKGIPNSISI 866



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 21/26 (80%), Positives = 22/26 (84%)
 Frame = -2

Query: 332 LYPNTSDHTGQAEGLTARGIPNSISI 255
           LYPNTSD  G A GL+ARGIPNSISI
Sbjct: 845 LYPNTSDLKGDAAGLSARGIPNSISI 870



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
 Frame = -2

Query: 332 LYPNTSDHTGQ-AEGLTARGIPNSISI 255
           LYPNTSD T +  +GLTA GIPNSISI
Sbjct: 851 LYPNTSDVTKEKGQGLTAMGIPNSISI 877



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>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)|
          Length = 864

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = -2

Query: 326 PNTSDHTGQAEGLTARGIPNSISI 255
           P T  H    EGLT RGIPNSISI
Sbjct: 841 PYTLLHPSSKEGLTFRGIPNSISI 864



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>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)|
          Length = 864

 Score = 31.2 bits (69), Expect = 0.67
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -2

Query: 326 PNTSDHTGQAEGLTARGIPNSISI 255
           P T  H    EGLT +GIPNSISI
Sbjct: 841 PYTLLHRSSEEGLTFKGIPNSISI 864



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -2

Query: 326 PNTSDHTGQAEGLTARGIPNSISI 255
           P T  +    EGLT RGIPNSISI
Sbjct: 843 PYTLLYPSSEEGLTCRGIPNSISI 866



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -2

Query: 326 PNTSDHTGQAEGLTARGIPNSISI 255
           P T  +    EGLT RGIPNSISI
Sbjct: 830 PYTLLYPSSEEGLTFRGIPNSISI 853



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>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)|
          Length = 839

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -2

Query: 326 PNTSDHTGQAEGLTARGIPNSISI 255
           P T  +    EGLT RGIPNSISI
Sbjct: 816 PYTLLYPSSEEGLTFRGIPNSISI 839



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = -2

Query: 332 LYPNTSDHTGQAEGLTARGIPNSISI 255
           L+PN+       EGLT RGIPNSISI
Sbjct: 847 LHPNS-------EGLTCRGIPNSISI 865



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = -2

Query: 326 PNTSDHTGQAEGLTARGIPNSISI 255
           P T  +    EGLT RGIPNSISI
Sbjct: 838 PYTLLYPSSKEGLTFRGIPNSISI 861



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>E74EA_DROME (P20105) Ecdysone-induced protein 74EF isoform A (ETS-related|
           protein E74A)
          Length = 829

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +1

Query: 124 HPYCLNYSCTGTTLCHTHTQASSGVSKQG*HKSMRSRRRTCSDQMDMLFGMPLAVSPSA 300
           +P+  NY+ T TT     + A SGVS      S  S  + C+D++    GMP A S SA
Sbjct: 404 NPHHRNYT-TATTGSFPPSPADSGVSDVD---SSSSGGQPCADELKARLGMPPATSASA 458



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>E74EB_DROME (P11536) Ecdysone-induced protein 74EF isoform B (ETS-related|
           protein E74B)
          Length = 883

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +1

Query: 124 HPYCLNYSCTGTTLCHTHTQASSGVSKQG*HKSMRSRRRTCSDQMDMLFGMPLAVSPSA 300
           +P+  NY+ T TT     + A SGVS      S  S  + C+D++    GMP A S SA
Sbjct: 458 NPHHRNYT-TATTGSFPPSPADSGVSDVD---SSSSGGQPCADELKARLGMPPATSASA 512



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>KRA49_HUMAN (Q9BYQ8) Keratin-associated protein 4-9 (Keratin-associated protein|
           4.9) (Ultrahigh sulfur keratin-associated protein 4.9)
           (Fragment)
          Length = 191

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
 Frame = +1

Query: 91  ASACRSD---PSCTHPYCLNYSCTGTTLCHTHTQASS 192
           +S CR     P C  P C   SC  TT CH     SS
Sbjct: 68  SSCCRPQCCQPVCCQPTCCRPSCCETTCCHPRCCISS 104



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>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)|
            (Pam/highwire/rpm-1 protein) (Regulator of presynaptic
            morphology protein 1) (Synapse defective protein 3)
          Length = 3766

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 109  DPSCTHPYCLNYSCTGTTLCHTHTQASSGVSKQ 207
            D +CTH  C+NY+ T   + HT      G+  +
Sbjct: 3463 DGTCTHEDCVNYAKTACQVMHTCNHFCGGIRNE 3495



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>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 308 TGQAEGLTARGIPNSISI 255
           T + EGLT RGIPNSISI
Sbjct: 845 TCEDEGLTFRGIPNSISI 862



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>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)|
          Length = 857

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 296 EGLTARGIPNSISI 255
           EGLT RGIPNSISI
Sbjct: 844 EGLTFRGIPNSISI 857



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>Y735_AGRT5 (Q8UHE7) Hypothetical RNA methyltransferase Atu0735/AGR_C_1331 (EC|
           2.1.1.-)
          Length = 416

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 61  DALTGSQLS*ASACRSDPSCTH--PYCLNYSCTGTTLCHTHTQASSGVSKQG*HKSMRSR 234
           D  T   ++ ASA R DP C H  P  +N +C G +L H   Q      ++    ++RS+
Sbjct: 44  DQGTVMSITEASADRRDPVCRHFGPEGINGTCGGCSLQHLADQPYHAFKRELVVSALRSK 103

Query: 235 RRT 243
             T
Sbjct: 104 GLT 106



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>KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-associated protein|
           4.5) (Ultrahigh sulfur keratin-associated protein 4.5)
          Length = 186

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 91  ASACRSDPSCTHPYCLNYSCTGTTLCHT 174
           +S CR  P C  P C   +C  TT C T
Sbjct: 73  SSCCR--PCCCRPSCCQTTCCRTTCCRT 98



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
 Frame = +1

Query: 91  ASACRS---DPSCTHPYCLNYSCTGTTLCHT 174
           +S CR    + SC  P C   SC  TT C T
Sbjct: 63  SSCCRPYCCESSCCRPCCCRPSCCQTTCCRT 93



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>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)|
          Length = 859

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 296 EGLTARGIPNSISI 255
           EGLT +GIPNS+SI
Sbjct: 846 EGLTGKGIPNSVSI 859



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 172 CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 47
           C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 715 CYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-associated protein|
           4.4) (Ultrahigh sulfur keratin-associated protein 4.4)
          Length = 166

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 94  SACRSDPSCTHPYCLNYSCTGTTLCHTHTQASS 192
           S C S  SC  P C   +C  TT CH     SS
Sbjct: 39  SCCVS--SCCRPQCCQTTCCRTTCCHPSCCVSS 69



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>E74EF_DROVI (Q7M3M6) Ecdysone-induced protein 74EF (ETS-related protein E74A)|
          Length = 873

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 124 HPYCLNYSCTGTTLCHTHTQASSGVSKQG*HKSMRSRRRTCSDQMDMLFGMPLAVSPSA 300
           +P+  NY+ T TT     + A SGVS      S  S  + C+D++    GMP   + SA
Sbjct: 447 NPHHRNYT-TATTGSFPPSPADSGVSDVD---SSSSGGQPCADELKARLGMPTTAATSA 501



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>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 172 CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 47
           C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 717 CYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)|
          Length = 381

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 327 PKHLRPHGTGRGAHRQGHPE 268
           P  L  H   +G HRQGHPE
Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259



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>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)|
          Length = 381

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 327 PKHLRPHGTGRGAHRQGHPE 268
           P  L  H   +G HRQGHPE
Sbjct: 240 PPGLHHHHKHKGQHRQGHPE 259



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>CF208_HUMAN (Q9H8X3) Protein C6orf208|
          Length = 128

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 82  LS*ASACRSDPSCTHPYCLNYSCTGTTLCHTHTQASSGVS 201
           +S  SAC S  S  H   LN  C G T+  +H+ A +GVS
Sbjct: 1   MSLCSACTSPAS--HQLLLN--CQGQTVAKSHSSADAGVS 36



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>KPTA_BURS3 (Q395F2) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 194

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 89  ELPHADQTRRARTLIALIIHAPAQLSV 169
           ELP  D TR +RTL  L+ HAP  + +
Sbjct: 7   ELPAPDATRISRTLSYLLRHAPQTIGL 33



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>ARNT_RAT (P41739) Aryl hydrocarbon receptor nuclear translocator (ARNT|
           protein) (Dioxin receptor, nuclear translocator)
           (Hypoxia-inducible factor 1 beta) (HIF-1 beta)
          Length = 800

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 288 HRQGHPEQHIHLI*ARPSSRPHAF--VLSLL 202
           HR    EQH+    A+PSS+P  F  +LS+L
Sbjct: 747 HRSSSNEQHVQPTSAQPSSQPEVFQEMLSML 777



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>ESPL1_HUMAN (Q14674) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein|
            ESPL1) (Extra spindle poles-like 1 protein)
          Length = 2120

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 153  RHNSLSHTHTS*LRCKQARIAQKHEVSTTDVLRSDGYAVRDAPGGEPL 296
            RH  L+H H      +Q   AQKH  S     +  G ++++ PG  PL
Sbjct: 1629 RHQLLTHLH------RQLSKAQKHRGSLEIADQLQGLSLQEMPGDVPL 1670


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,330,939
Number of Sequences: 219361
Number of extensions: 1014826
Number of successful extensions: 2665
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2647
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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