ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 283 2e-73
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 123 4e-25
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 74 3e-10
4emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 74 3e-10
5gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 74 3e-10
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
7dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
8ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
9gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 62 1e-06
10ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA 60 5e-06
11ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA 60 5e-06
12gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 60 5e-06
13gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 60 5e-06
14gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual posit... 60 5e-06
15dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
16dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
17dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
18dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
19gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 58 2e-05
20gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRN... 56 7e-05
21gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 48 0.018
22ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.071
23gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.071
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.071
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.071
26dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.071
27dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.071
28dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.071
29gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA,... 46 0.071
30gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA,... 46 0.071
31dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2... 46 0.071
32ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.28
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
34dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
35dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
36dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
37gb|AY111869.1| Zea mays CL452_-8 mRNA sequence 44 0.28
38gb|AY103567.1| Zea mays PCO116252 mRNA sequence 44 0.28
39gb|AY110522.1| Zea mays CL4677_2 mRNA sequence 40 4.4
40gb|AY104322.1| Zea mays PCO093659 mRNA sequence 40 4.4 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  283 bits (143), Expect = 2e-73
 Identities = 149/151 (98%)
 Strand = Plus / Minus

                                                                        
Query: 183  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 242
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                        
Query: 243  gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctg 2608

                                           
Query: 303  tcccgtgtggtcggaggtgtttgggtagagc 333
            |||||||||||||||||||||||||||||||
Sbjct: 2607 tcccgtgtggtcggaggtgtttgggtagagc 2577



 Score =  262 bits (132), Expect = 6e-67
 Identities = 148/153 (96%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 20   ttcattattgggcaaaacaaggggttttttctgcacacgacgatgcattgaccggtagcc 79
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 80   agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 135
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 136  cttaattattcatgcaccggcacaactctctgt 168
            |||||||||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744
to top
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score =  123 bits (62), Expect = 4e-25
 Identities = 77/82 (93%)
 Strand = Plus / Minus

                                                                       
Query: 252 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 311
           ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 906 tcagatggagatgctgttggggatgcccctggccgtgagcccctcggcctggcccgtgtg 847

                                 
Query: 312 gtcggaggtgtttgggtagagc 333
           |||||||||||| |||||||||
Sbjct: 846 gtcggaggtgttggggtagagc 825



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 13   catcgacttcattattgggcaaaacaaggggttttttctgcacacgacga 62
            ||||||||| |||||||||||||  |||||  |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 95   ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 139
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                            
Query: 249      agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 308
                |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 30026393

                                         
Query: 309      gtggtcggaggtgtttgggtagagc 333
                | |||||||||||||||||||||||
Sbjct: 30026392 gaggtcggaggtgtttgggtagagc 30026368



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 252      tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
                ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27821686 tcagatggagatgctgttggggatgcccatggcggtgagccc 27821645
to top
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                        
Query: 249  agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 308
            |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 2698 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 2639

                                     
Query: 309  gtggtcggaggtgtttgggtagagc 333
            | |||||||||||||||||||||||
Sbjct: 2638 gaggtcggaggtgtttgggtagagc 2614
to top
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 73/85 (85%)
 Strand = Plus / Plus

                                                                         
Query: 249   agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 308
             |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 81299 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 81358

                                      
Query: 309   gtggtcggaggtgtttgggtagagc 333
             | |||||||||||||||||||||||
Sbjct: 81359 gaggtcggaggtgtttgggtagagc 81383
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                            
Query: 249      agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 308
                |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 30117815

                                         
Query: 309      gtggtcggaggtgtttgggtagagc 333
                | |||||||||||||||||||||||
Sbjct: 30117814 gaggtcggaggtgtttgggtagagc 30117790



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 252      tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
                ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 27913010 tcagatggagatgctgttggggatgcccatggcggtgagccc 27912969
to top
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                        
Query: 249  agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 308
            |||||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| |
Sbjct: 2731 agatcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgccctt 2672

                                     
Query: 309  gtggtcggaggtgtttgggtagagc 333
            | |||||||||||||||||||||||
Sbjct: 2671 gaggtcggaggtgtttgggtagagc 2647
to top
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                        
Query: 252  tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 311
            ||||||||| |||||||| |||||||||||||||| ||| ||  | || |  ||| || |
Sbjct: 2613 tcagatggagatgctgttggggatgcccctggcggagaggccggcagcgtcgcccttgag 2554

                                  
Query: 312  gtcggaggtgtttgggtagagc 333
            ||||||||||||||||||||||
Sbjct: 2553 gtcggaggtgtttgggtagagc 2532
to top
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 244  tgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccc 294
            ||||||| ||||||||| | |||||| ||||||||| ||||||||||||||
Sbjct: 2772 tgctcagctcagatggagacgctgttggggatgcccatggcggtgagcccc 2722
to top
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2686

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 252  tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2446 tcagatggagatgctgttggggatgcccatggcggtgagccc 2405
to top
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3165

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 252  tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2925 tcagatggagatgctgttggggatgcccatggcggtgagccc 2884
to top
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 252   tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
             ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 65816 tcagatggagatgctgttggggatgcccatggcggtgagccc 65775
to top
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                       
Query: 252 tcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtg 311
           ||||||||| |||||||| ||||||||| | |||||||||||  ||||    ||| ||||
Sbjct: 753 tcagatggagatgctgttggggatgcccttagcggtgagcccggcggcggcgcccttgtg 694

                                 
Query: 312 gtcggaggtgtttgggtagagc 333
            ||||||||||| |||||||||
Sbjct: 693 atcggaggtgttggggtagagc 672
to top
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity
            lipoxygenase mRNA, complete cds
          Length = 3154

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 252  tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2919 tcagatggagatgctgttggggatgcccatggcggtgagccc 2878
to top
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full
            insert sequence
          Length = 1560

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 252  tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1332 tcagatggagatgctgttggggatgcccatggcggtgagccc 1291
to top
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full
            insert sequence
          Length = 2851

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 252  tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2597 tcagatggagatgctgttggggatgcccatggcggtgagccc 2556
to top
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full
            insert sequence
          Length = 3167

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 252  tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 2927 tcagatggagatgctgttggggatgcccatggcggtgagccc 2886
to top
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full
            insert sequence
          Length = 1726

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 252  tcagatggatatgctgttcgggatgcccctggcggtgagccc 293
            ||||||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1497 tcagatggagatgctgttggggatgcccatggcggtgagccc 1456
to top
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                        
Query: 249  agatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgt 308
            |||| ||||||| |||||||| ||||||||| ||||||| |||||  | ||    ||| |
Sbjct: 2660 agattagatggagatgctgttggggatgcccttggcggtaagcccggcagcggcgccctt 2601

                                     
Query: 309  gtggtcggaggtgtttgggtagagc 333
            ||||||||||||||| |||||||||
Sbjct: 2600 gtggtcggaggtgttggggtagagc 2576
to top
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds
          Length = 1331

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 254  agatggatatgctgttcgggatgcccctggcggtgagcccctcggcctgtcccgtgtggt 313
            ||||||| |||||||| ||||||||| ||||||| |||||  | ||    ||| ||||||
Sbjct: 1084 agatggagatgctgttggggatgcccttggcggtaagcccggcagcggcgcccttgtggt 1025

                                
Query: 314  cggaggtgtttgggtagagc 333
            |||||||||| |||||||||
Sbjct: 1024 cggaggtgttggggtagagc 1005
to top
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 250  gatcagatggatatgctgttcgggatgcccctggcggtga 289
            ||||||||||| |||||||| ||||||||| |||| ||||
Sbjct: 1558 gatcagatggagatgctgttggggatgcccttggctgtga 1519
to top
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3198

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 251  atcagatggatatgctgttcgggatgcccctggcggtga 289
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2978 atcagatggatgtgctgttggggatgcccatgccggtga 2940
to top
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 127    ccttattgccttaattattcatg 149
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 127   ccttattgccttaattattcatg 149
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 251      atcagatggatatgctgttcgggatgcccctggcggtga 289
                ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 25242576 atcagatggatgtgctgttggggatgcccatgccggtga 25242538



 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 251      atcagatggatatgctgttcgggatgcccctggcggtga 289
                ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 25209453 atcagatggatgtgctgttggggatgcccatgccggtga 25209491
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 127      ccttattgccttaattattcatg 149
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 127      ccttattgccttaattattcatg 149
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
to top
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1168A08
          Length = 138135

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 251    atcagatggatatgctgttcgggatgcccctggcggtga 289
              ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 107699 atcagatggatgtgctgttggggatgcccatgccggtga 107661



 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 251   atcagatggatatgctgttcgggatgcccctggcggtga 289
             ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 74576 atcagatggatgtgctgttggggatgcccatgccggtga 74614
to top
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 251   atcagatggatatgctgttcgggatgcccctggcggtga 289
             ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 17761 atcagatggatgtgctgttggggatgcccatgccggtga 17723
to top
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full
            insert sequence
          Length = 3196

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 251  atcagatggatatgctgttcgggatgcccctggcggtga 289
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2976 atcagatggatgtgctgttggggatgcccatgccggtga 2938
to top
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds
          Length = 2232

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 251  atcagatggatatgctgttcgggatgcccctggcggtga 289
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2053 atcagatggatgtgctgttggggatgcccatgccggtga 2015
to top
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds
          Length = 2664

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 251  atcagatggatatgctgttcgggatgcccctggcggtga 289
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2461 atcagatggatgtgctgttggggatgcccatgccggtga 2423
to top
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for
            lipoxygenase, complete cds
          Length = 3007

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 251  atcagatggatatgctgttcgggatgcccctggcggtga 289
            ||||||||||| ||||||| ||||||||| || ||||||
Sbjct: 2891 atcagatggatgtgctgttggggatgcccatgccggtga 2853
to top
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 252  tcagatggatatgctgttcgggatgcccct 281
            ||||||||| |||||||| |||||||||||
Sbjct: 2881 tcagatggagatgctgtttgggatgcccct 2852
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 252     tcagatggatatgctgttcgggatgcccct 281
               ||||||||| |||||||| |||||||||||
Sbjct: 5276963 tcagatggagatgctgtttgggatgcccct 5276992
to top
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 252  tcagatggatatgctgttcgggatgcccct 281
            ||||||||| |||||||| |||||||||||
Sbjct: 3266 tcagatggagatgctgtttgggatgcccct 3295
to top
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 252  tcagatggatatgctgttcgggatgcccct 281
            ||||||||| |||||||| |||||||||||
Sbjct: 2880 tcagatggagatgctgtttgggatgcccct 2851
to top
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 252  tcagatggatatgctgttcgggatgcccct 281
            ||||||||| |||||||| |||||||||||
Sbjct: 2042 tcagatggagatgctgtttgggatgcccct 2013
to top
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence
          Length = 568

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 256 atggatatgctgttcgggatgcccctggcggtgagcccctcg 297
           ||||| |||||||| || |||||| |||| ||||||||||||
Sbjct: 363 atggagatgctgttgggaatgcccatggcagtgagcccctcg 322
to top
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence
          Length = 3135

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 256  atggatatgctgttcgggatgcccctggcggtgagcccctcggcct 301
            ||||| |||||||| || |||||| |||| || |||||||||||||
Sbjct: 2896 atggagatgctgttgggaatgcccatggcagtaagcccctcggcct 2851
to top
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 250 gatcagatggatatgctgttcgggatgcccct 281
           ||||||||||| |||||| | |||||||||||
Sbjct: 132 gatcagatggagatgctgctggggatgcccct 163
to top
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 250  gatcagatggatatgctgttcgggatgcccct 281
            ||||||||||| |||||| | |||||||||||
Sbjct: 1216 gatcagatggagatgctgctggggatgcccct 1185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,908,181
Number of Sequences: 3902068
Number of extensions: 1908181
Number of successful extensions: 35223
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35073
Number of HSP's gapped (non-prelim): 148
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top