ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMDR_EMENI (P15699) Acetamidase regulatory protein 28 6.9
2CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 ... 28 9.0

>AMDR_EMENI (P15699) Acetamidase regulatory protein|
          Length = 765

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 161 ASPTSQPALPPLQPTSE 111
           A+P S P++PPLQP+S+
Sbjct: 642 ATPPSAPSIPPLQPSSQ 658



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>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced
           gene B protein)
          Length = 2715

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 4   EQAHPGEPPFDL 39
           ++ HPGEPPFDL
Sbjct: 304 QEVHPGEPPFDL 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,548,002
Number of Sequences: 219361
Number of extensions: 416519
Number of successful extensions: 1165
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 80,573,946
effective HSP length: 29
effective length of database: 74,212,477
effective search space used: 1781099448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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