>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast|
           precursor
          Length = 387

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 250 STKAKTAMHGRKFGGNPVVAVFYPENKFAEKD 155
           +TKA   + GR FGG  V A FY E KF++ +
Sbjct: 345 TTKALVDLDGRYFGGRTVRATFYDEEKFSKNE 376

>SRA31_CAEEL (Q18881) Serpentine receptor class alpha-31 (Protein sra-31)|
          Length = 338

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 83  CKSNELHKTLLALEKRDNLCCRIIVLFSKLVLGV-EDRNNWVSTKFPSMHRRLCFGGAIN 259
           C S E+  TL +     N C  ++++ S + L V   R  W +  FP+  R L F   IN
Sbjct: 7   CTSEEIRLTLTSSFMMGNHCFILLIIISSVFLTVFAIRKLWKNNIFPNCTRTLLFSAIIN 66

>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding|
           motif protein 17)
          Length = 405

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 259 VDGSTKAKTAMHGRKFGGNPVVAVFYPENKFAEKD 155
           V+ + KA   ++GR FGG  V A FY  +KF   D
Sbjct: 366 VESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLD 400

>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding|
           motif protein 17)
          Length = 401

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 259 VDGSTKAKTAMHGRKFGGNPVVAVFYPENKFAEKD 155
           V+ + KA   ++GR FGG  V A FY  +KF   D
Sbjct: 362 VESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLD 396

>TILS_NEPOL (Q9T390) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 367

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 3   LSSNINNWRL--CINPGLQESSTRRGNVAVNRTNYTKHYWH 119
           L +  N W+L  C +P  Q+   RR  +      Y +H+W+
Sbjct: 213 LRNYANRWKLPLCYDPSNQDQRIRRNRIRHELLPYLRHWWN 253

>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly|
           U-binding splicing factor) (Protein half pint) (PUF60
           homolog)
          Length = 637

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 244 KAKTAMHGRKFGGNPVVAVFYPENKFAEKD 155
           + K A+ GR FGG  VVA  Y +  F + D
Sbjct: 605 RGKEALDGRFFGGRRVVAELYDQGIFDQGD 634


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,644,206
Number of Sequences: 219361
Number of extensions: 685960
Number of successful extensions: 1693
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 80,573,946
effective HSP length: 63
effective length of database: 66,754,203
effective search space used: 1602100872
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)