ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ019635.1| Triticum aestivum U2AF large subunit (U2AF65) mRN... 426 e-116
2gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
3gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 113 3e-22
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
6dbj|AK066311.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 7e-20
7gb|AY111048.1| Zea mays CL3975_1 mRNA sequence 76 6e-11
8gb|AY103558.1| Zea mays PCO134114 mRNA sequence 66 6e-08
9gb|AY112521.1| Zea mays CL1839_9 mRNA sequence 62 9e-07
10emb|Y18351.1|NPL18351 Nicotiana plumbaginifolia mRNA for U2 snRN... 60 4e-06
11emb|Y18350.1|NPL18350 Nicotiana plumbaginifolia mRNA for U2 snRN... 60 4e-06
12gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, com... 60 4e-06
13gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb044... 52 9e-04
14gb|DQ019636.1| Triticum aestivum U2AF large subunit (U2AF65a) mR... 46 0.055
15gb|BT013617.1| Lycopersicon esculentum clone 132418R, mRNA sequence 44 0.22
16emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 ... 44 0.22
17gb|AC174607.1| Lycopersicon esculentum, complete sequence 44 0.22
18gb|AC158769.2| Mus musculus chromosome 15, clone RP23-128J3, com... 42 0.86
19gb|AC068600.5| Homo sapiens BAC clone RP11-567N20 from 2, comple... 42 0.86
20gb|AC123606.11| Mus musculus chromosome 15, clone RP24-528D12, c... 42 0.86
21gb|BC077314.1| Xenopus laevis ornithine aminotransferase (gyrate... 40 3.4
22gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 3.4
23emb|CR974476.4| Mouse DNA sequence from clone RP24-469J5 on chro... 40 3.4
24gb|BC045249.1| Xenopus laevis ornithine aminotransferase, mRNA (... 40 3.4
25gb|AC122304.4| Mus musculus BAC clone RP23-283G11 from 18, compl... 40 3.4
26emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 3.4
27emb|CR788287.7| Mouse DNA sequence from clone RP23-362B9 on chro... 40 3.4
28emb|BX324204.32| Mouse DNA sequence from clone RP23-86F8 on chro... 40 3.4
29dbj|AK140724.1| Mus musculus adult male corpus striatum cDNA, RI... 40 3.4
30emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chr... 40 3.4
31emb|CR354442.5| Mouse DNA sequence from clone RP24-562O19 on chr... 40 3.4
32gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp... 40 3.4
33gb|AC023906.7|AC023906 Homo sapiens chromosome 15 clone CTD-2184... 40 3.4
34ref|NM_001028646.1| Caenorhabditis elegans Serpentine Receptor, ... 40 3.4
35ref|NM_001028647.1| Caenorhabditis elegans Serpentine Receptor, ... 40 3.4
36gb|BC040773.1| Mus musculus similar to LRRGT00085, mRNA (cDNA cl... 40 3.4
37gb|U53139.2| Caenorhabditis elegans cosmid F18E3, complete sequence 40 3.4
38emb|BX890623.6| Mouse DNA sequence from clone RP23-83O23 on chro... 40 3.4
39emb|BX813319.4| Mouse DNA sequence from clone RP23-54B12 on chro... 40 3.4
40gb|AY005479.1| Xenopus laevis ornithine aminotransferase (OAT) m... 40 3.4
41emb|BX682537.3| Mouse DNA sequence from clone RP23-376N23 on chr... 40 3.4
42emb|BX511235.10| Mouse DNA sequence from clone RP23-232H13 on ch... 40 3.4
43emb|BX284639.15| Mouse DNA sequence from clone RP24-87L14 on chr... 40 3.4
44emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on ch... 40 3.4
45emb|BX005149.16| Mouse DNA sequence from clone RP24-574J13 on ch... 40 3.4
46emb|CT010482.9| Mouse DNA sequence from clone RP23-282O12 on chr... 40 3.4
47emb|CR955031.3| Mouse DNA sequence from clone RP24-395K22 on chr... 40 3.4
48gb|U16118.1|PSU16118 Pseudomonas syringae pv. tomato avrE avirul... 40 3.4
49emb|AL845456.11| Mouse DNA sequence from clone RP23-90C6 on chro... 40 3.4
50gb|U97505.1|PSU97505 Pseudomonas syringae avirulence protein (av... 40 3.4
51emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on ch... 40 3.4
52emb|AL845494.3| Mouse DNA sequence from clone RP23-330D3 on chro... 40 3.4
53emb|AL845491.3| Mouse DNA sequence from clone RP23-360A2 on chro... 40 3.4 
>gb|DQ019635.1| Triticum aestivum U2AF large subunit (U2AF65) mRNA, complete cds
          Length = 1786

 Score =  426 bits (215), Expect = e-116
 Identities = 251/263 (95%)
 Strand = Plus / Minus

                                                                        
Query: 1    atctatcttccaatattaataactggcggctctgcataaatccagggctacaagaaagct 60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1780 atctatcttccaatattaataactggcggttctgcataaatccagggctacaagaaagct 1721

                                                                        
Query: 61   caactagaaggggaaacgttgctgtaaatcgaacgaactacacaaaacactattggcatt 120
            | |||||||||| ||||||||||||||||||||| ||||||| ||| |||||||| ||||
Sbjct: 1720 cgactagaagggaaaacgttgctgtaaatcgaacaaactacagaaagcactattgtcatt 1661

                                                                        
Query: 121  ggaaaagagagataatttatgctgccgcatcatagtccttttcagcaaacttgttctcgg 180
            |||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||
Sbjct: 1660 ggaaaagagagataatttatgctgccgcgtcatagtcctcatcagcaaacttgttctcgg 1601

                                                                        
Query: 181  ggtagaagaccgcaacaactgggtttccaccaaatttccttccatgcatcgccgtctttg 240
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1600 ggtagaagaccgcaacaactgggtttccaccgaatttccttccatgcatcgccgtctttg 1541

                                   
Query: 241  ctttggtggagccatcaacatct 263
            |||||||||| ||||||||||||
Sbjct: 1540 ctttggtggaaccatcaacatct 1518
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>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0064H09, complete sequence
          Length = 146742

 Score =  113 bits (57), Expect = 3e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                         
Query: 167   aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 226
             |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct: 23869 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 23810

                                                  
Query: 227   catcgccgtctttgctttggtggagccatcaacatct 263
             ||| ||||||||||||||||||| ||| || ||||||
Sbjct: 23809 cattgccgtctttgctttggtggcgccgtccacatct 23773
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>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0082P17, complete sequence
          Length = 157539

 Score =  113 bits (57), Expect = 3e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                          
Query: 167    aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 226
              |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct: 131487 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 131428

                                                   
Query: 227    catcgccgtctttgctttggtggagccatcaacatct 263
              ||| ||||||||||||||||||| ||| || ||||||
Sbjct: 131427 cattgccgtctttgctttggtggcgccgtccacatct 131391
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  113 bits (57), Expect = 3e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                            
Query: 167      aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 226
                |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct: 26720924 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 26720865

                                                     
Query: 227      catcgccgtctttgctttggtggagccatcaacatct 263
                ||| ||||||||||||||||||| ||| || ||||||
Sbjct: 26720864 cattgccgtctttgctttggtggcgccgtccacatct 26720828
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  113 bits (57), Expect = 3e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                            
Query: 167      aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 226
                |||||||||||| |||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct: 27046474 aaacttgttctcagggtagaacactgcaacaactggatttccaccgaacttccttccatg 27046415

                                                     
Query: 227      catcgccgtctttgctttggtggagccatcaacatct 263
                ||| ||||||||||||||||||| ||| || ||||||
Sbjct: 27046414 cattgccgtctttgctttggtggcgccgtccacatct 27046378
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>dbj|AK066311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068A09, full
            insert sequence
          Length = 2841

 Score =  105 bits (53), Expect = 7e-20
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                        
Query: 167  aaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccatg 226
            |||||||||||| |||||||| || || |||||||| |||||||| || |||||||||||
Sbjct: 2706 aaacttgttctcagggtagaacactgcgacaactggatttccaccgaacttccttccatg 2647

                                                 
Query: 227  catcgccgtctttgctttggtggagccatcaacatct 263
            ||| ||||||||||||||||||| ||| || ||||||
Sbjct: 2646 cattgccgtctttgctttggtggcgccgtccacatct 2610
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>gb|AY111048.1| Zea mays CL3975_1 mRNA sequence
          Length = 974

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                       
Query: 165 gcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcca 224
           |||||||||| ||| |  ||| |||| || || |||||||| ||||||||||||||||||
Sbjct: 659 gcaaacttgtcctccgcatagcagacagcgaccactgggttcccaccaaatttccttcca 600

                                 
Query: 225 tgcatcgccgtctttgctttgg 246
           |||| ||| |||||||||||||
Sbjct: 599 tgcagcgctgtctttgctttgg 578
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>gb|AY103558.1| Zea mays PCO134114 mRNA sequence
          Length = 1707

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                        
Query: 163  cagcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttc 222
            |||| ||||||| |||||| ||||| || || || ||  |||| || ||||||||||  |
Sbjct: 1348 cagcgaacttgtcctcgggatagaacacggccaccacctggttcccgccaaatttccgcc 1289

                                                     
Query: 223  catgcatcgccgtctttgctttggtggagccatcaacatct 263
            |||||||| |||||||||||||||| ||||| || ||||||
Sbjct: 1288 catgcatccccgtctttgctttggtcgagccctcgacatct 1248
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>gb|AY112521.1| Zea mays CL1839_9 mRNA sequence
          Length = 647

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 82/99 (82%)
 Strand = Plus / Plus

                                                                       
Query: 165 gcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcca 224
           |||||||||| ||| |||||||| ||||| || ||  |||| || || |||||||  |||
Sbjct: 391 gcaaacttgtcctcagggtagaacaccgccaccacctggttcccgccgaatttccgccca 450

                                                  
Query: 225 tgcatcgccgtctttgctttggtggagccatcaacatct 263
           |||||| | |||||||||||||| ||||| || ||||||
Sbjct: 451 tgcatccctgtctttgctttggttgagccctccacatct 489
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>emb|Y18351.1|NPL18351 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large
            subunit 65a
          Length = 2108

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 168  aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 225
            ||||||||||| ||||||||||| || |||||| |||| ||||| ||||| |||||||
Sbjct: 1705 aacttgttctccgggtagaagacagctacaacttggttaccaccgaattttcttccat 1648
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>emb|Y18350.1|NPL18350 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large
            subunit 65b
          Length = 2204

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 168  aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 225
            |||||||| || || |||||||| ||||||||| |||| ||||||||||| |||||||
Sbjct: 1835 aacttgttttctggatagaagacagcaacaacttggttgccaccaaattttcttccat 1778
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>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence
          Length = 105308

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 168   aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 225
             ||||||||||| || |||||||| |||| |||| |||| ||||||||||| |||||||
Sbjct: 67692 aacttgttctctggatagaagacagcaataacttggttaccaccaaattttcttccat 67635
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>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete
             sequence
          Length = 132549

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 202   ggtttccaccaaatttccttccatgcatcgccgtctttgctttggt 247
             |||| ||||||||||||   ||||||||| ||||||||||||||||
Sbjct: 75654 ggttcccaccaaatttctgcccatgcatctccgtctttgctttggt 75699
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>gb|DQ019636.1| Triticum aestivum U2AF large subunit (U2AF65a) mRNA, complete cds
          Length = 2240

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 161  ttcagcaaacttgttctcggggtagaa 187
            |||||| ||||||||||||||||||||
Sbjct: 2061 ttcagcgaacttgttctcggggtagaa 2035
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>gb|BT013617.1| Lycopersicon esculentum clone 132418R, mRNA sequence
          Length = 2047

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 168  aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 225
            |||||||| || || |||||||| || | |||| |||| ||||||||||| |||||||
Sbjct: 1838 aacttgttttctggatagaagacagctataacttggttgccaccaaattttcttccat 1781
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>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3,
             complete sequence
          Length = 117153

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                         
Query: 164   agcaaacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttcc 223
             |||||| |||||||| || || ||||| ||||  ||| | |||||||||||||| |||||
Sbjct: 86776 agcaaatttgttctctggataaaagacagcaattacttgatttccaccaaattttcttcc 86717

               
Query: 224   at 225
             ||
Sbjct: 86716 at 86715
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>gb|AC174607.1| Lycopersicon esculentum, complete sequence
          Length = 115283

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                       
Query: 168   aacttgttctcggggtagaagaccgcaacaactgggtttccaccaaatttccttccat 225
             |||||||| || || |||||||| || | |||| |||| ||||||||||| |||||||
Sbjct: 93797 aacttgttttctggatagaagacagctataacttggttgccaccaaattttcttccat 93740
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>gb|AC158769.2| Mus musculus chromosome 15, clone RP23-128J3, complete sequence
          Length = 199472

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 111   tattggcattggaaaagagagataa 135
             |||||||||||||||||||| ||||
Sbjct: 51940 tattggcattggaaaagagacataa 51916
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>gb|AC068600.5| Homo sapiens BAC clone RP11-567N20 from 2, complete sequence
          Length = 136657

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 155    gtccttttcagcaaacttgtt 175
              |||||||||||||||||||||
Sbjct: 108423 gtccttttcagcaaacttgtt 108443
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>gb|AC123606.11| Mus musculus chromosome 15, clone RP24-528D12, complete sequence
          Length = 175623

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 111   tattggcattggaaaagagagataa 135
             |||||||||||||||||||| ||||
Sbjct: 82896 tattggcattggaaaagagacataa 82872
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>gb|BC077314.1| Xenopus laevis ornithine aminotransferase (gyrate atrophy), mRNA
            (cDNA clone MGC:80244 IMAGE:5048763), complete cds
          Length = 1903

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 218  ccttccatgcatcgccgtctttgctttg 245
            |||||||||| |||| ||||||||||||
Sbjct: 1246 ccttccatgcgtcgcagtctttgctttg 1219
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 230     cgccgtctttgctttggtgg 249
               ||||||||||||||||||||
Sbjct: 1518633 cgccgtctttgctttggtgg 1518652
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>emb|CR974476.4| Mouse DNA sequence from clone RP24-469J5 on chromosome 2, complete
              sequence
          Length = 138122

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 109448 actattggcattggaaaaga 109429
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>gb|BC045249.1| Xenopus laevis ornithine aminotransferase, mRNA (cDNA clone MGC:53882
            IMAGE:5543139), complete cds
          Length = 1910

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 218  ccttccatgcatcgccgtctttgctttg 245
            ||||||||||||| | ||||||||||||
Sbjct: 1235 ccttccatgcatcacagtctttgctttg 1208
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>gb|AC122304.4| Mus musculus BAC clone RP23-283G11 from 18, complete sequence
          Length = 184090

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     atctatcttccaatattaat 20
             ||||||||||||||||||||
Sbjct: 46772 atctatcttccaatattaat 46791
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>emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              2/17
          Length = 349287

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    acacaaaacactattggcat 119
              ||||||||||||||||||||
Sbjct: 127467 acacaaaacactattggcat 127486
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>emb|CR788287.7| Mouse DNA sequence from clone RP23-362B9 on chromosome 2, complete
             sequence
          Length = 98311

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 29442 actattggcattggaaaaga 29461
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>emb|BX324204.32| Mouse DNA sequence from clone RP23-86F8 on chromosome 2, complete
             sequence
          Length = 90051

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 86001 actattggcattggaaaaga 85982
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>dbj|AK140724.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
            enriched library, clone:C030019B04
            product:unclassifiable, full insert sequence
          Length = 2461

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  actattggcattggaaaaga 128
            ||||||||||||||||||||
Sbjct: 2303 actattggcattggaaaaga 2284
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>emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chromosome 2, complete
              sequence
          Length = 193326

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 168702 actattggcattggaaaaga 168721



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 68695 actattggcattggaaaaga 68714
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>emb|CR354442.5| Mouse DNA sequence from clone RP24-562O19 on chromosome 2, complete
              sequence
          Length = 145110

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 139720 actattggcattggaaaaga 139701



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  actattggcattggaaaaga 128
            ||||||||||||||||||||
Sbjct: 7207 actattggcattggaaaaga 7226
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>gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp pathogenicity island,
             complete sequence
          Length = 52498

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   cgccgtctttgctttggtgg 249
             ||||||||||||||||||||
Sbjct: 35331 cgccgtctttgctttggtgg 35312
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>gb|AC023906.7|AC023906 Homo sapiens chromosome 15 clone CTD-2184D3 map 15q21.2, complete
             sequence
          Length = 93287

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     tatcttccaatattaataac 23
             ||||||||||||||||||||
Sbjct: 42280 tatcttccaatattaataac 42261
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>ref|NM_001028646.1| Caenorhabditis elegans Serpentine Receptor, class W family member
           (srw-68) (srw-68) mRNA, complete cds
          Length = 1017

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 actgggtttccaccaaattt 217
           ||||||||||||||||||||
Sbjct: 580 actgggtttccaccaaattt 599
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>ref|NM_001028647.1| Caenorhabditis elegans Serpentine Receptor, class W family member
           (srw-68) (srw-68) mRNA, complete cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 actgggtttccaccaaattt 217
           ||||||||||||||||||||
Sbjct: 580 actgggtttccaccaaattt 599
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>gb|BC040773.1| Mus musculus similar to LRRGT00085, mRNA (cDNA clone IMAGE:4505796)
          Length = 4158

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  actattggcattggaaaaga 128
            ||||||||||||||||||||
Sbjct: 2242 actattggcattggaaaaga 2223
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>gb|U53139.2| Caenorhabditis elegans cosmid F18E3, complete sequence
          Length = 23138

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   actgggtttccaccaaattt 217
             ||||||||||||||||||||
Sbjct: 13856 actgggtttccaccaaattt 13837
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>emb|BX890623.6| Mouse DNA sequence from clone RP23-83O23 on chromosome 2, complete
             sequence
          Length = 226542

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 31401 actattggcattggaaaaga 31420
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>emb|BX813319.4| Mouse DNA sequence from clone RP23-54B12 on chromosome 2, complete
              sequence
          Length = 217197

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 101215 actattggcattggaaaaga 101196
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>gb|AY005479.1| Xenopus laevis ornithine aminotransferase (OAT) mRNA, complete cds
          Length = 1320

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 218  ccttccatgcatcgccgtctttgctttg 245
            ||||||||||||| | ||||||||||||
Sbjct: 1177 ccttccatgcatcacagtctttgctttg 1150
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>emb|BX682537.3| Mouse DNA sequence from clone RP23-376N23 on chromosome 2, complete
              sequence
          Length = 186050

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 121988 actattggcattggaaaaga 122007



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 24404 actattggcattggaaaaga 24423
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>emb|BX511235.10| Mouse DNA sequence from clone RP23-232H13 on chromosome 2, complete
              sequence
          Length = 169581

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 161139 actattggcattggaaaaga 161120



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 71730 actattggcattggaaaaga 71711
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>emb|BX284639.15| Mouse DNA sequence from clone RP24-87L14 on chromosome 2, complete
            sequence
          Length = 115602

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  actattggcattggaaaaga 128
            ||||||||||||||||||||
Sbjct: 6045 actattggcattggaaaaga 6064
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>emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on chromosome 2, complete
              sequence
          Length = 218484

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 123098 actattggcattggaaaaga 123079
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>emb|BX005149.16| Mouse DNA sequence from clone RP24-574J13 on chromosome 2, complete
              sequence
          Length = 179228

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 129176 actattggcattggaaaaga 129157
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>emb|CT010482.9| Mouse DNA sequence from clone RP23-282O12 on chromosome 2, complete
             sequence
          Length = 188883

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 93766 actattggcattggaaaaga 93747
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>emb|CR955031.3| Mouse DNA sequence from clone RP24-395K22 on chromosome 2, complete
             sequence
          Length = 178000

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 46000 actattggcattggaaaaga 46019
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>gb|U16118.1|PSU16118 Pseudomonas syringae pv. tomato avrE avirulence locus,
            transcriptional units II and III, promoter region, and
            orf, partial cds
          Length = 2008

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  cgccgtctttgctttggtgg 249
            ||||||||||||||||||||
Sbjct: 1275 cgccgtctttgctttggtgg 1256
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>emb|AL845456.11| Mouse DNA sequence from clone RP23-90C6 on chromosome 2, complete
              sequence
          Length = 158544

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 152457 actattggcattggaaaaga 152438
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>gb|U97505.1|PSU97505 Pseudomonas syringae avirulence protein (avrE) and avirulence protein
            (avrF) genes, complete cds
          Length = 6130

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  cgccgtctttgctttggtgg 249
            ||||||||||||||||||||
Sbjct: 1153 cgccgtctttgctttggtgg 1134
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>emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on chromosome 2, complete
             sequence
          Length = 128936

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   actattggcattggaaaaga 128
             ||||||||||||||||||||
Sbjct: 36581 actattggcattggaaaaga 36600
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>emb|AL845494.3| Mouse DNA sequence from clone RP23-330D3 on chromosome 2, complete
              sequence
          Length = 216517

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 111884 actattggcattggaaaaga 111903
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>emb|AL845491.3| Mouse DNA sequence from clone RP23-360A2 on chromosome 2, complete
              sequence
          Length = 201381

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    actattggcattggaaaaga 128
              ||||||||||||||||||||
Sbjct: 142332 actattggcattggaaaaga 142351


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,588,629
Number of Sequences: 3902068
Number of extensions: 2588629
Number of successful extensions: 43075
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42985
Number of HSP's gapped (non-prelim): 90
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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