ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) ... 28 5.0
2BI54_MOUSE (P28664) Brain protein I54 28 8.6

>CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)|
           (T-cad)
          Length = 712

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 37  GYYRKKNYIDNTIEQTQQQPIVHLVYNIYQG 129
           G+ +K  YI+   E T+ QPI++LV++  +G
Sbjct: 30  GFQQKVFYIEQPFEFTEDQPILNLVFDDCKG 60



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>BI54_MOUSE (P28664) Brain protein I54|
          Length = 130

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
 Frame = -1

Query: 145 WFIRAGLGKCCTLNVLSV--------VVEFVRLYCQYSFFSCNILAPQRQFKGIY 5
           WF+ + LG+ C L  L          ++EF   +    FF     AP+    G +
Sbjct: 15  WFVGSALGRSCPLGFLGFHQPSLSLDILEFCGKFFSLEFFQLTACAPKEGVSGTH 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,902,936
Number of Sequences: 219361
Number of extensions: 522129
Number of successful extensions: 1485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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