ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC153877.5| Mus musculus 6 BAC RP23-258E21 (Roswell Park Canc... 42 0.64
2gb|AC154011.3| Mus musculus 6 BAC RP24-261O15 (Roswell Park Canc... 42 0.64
3gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, com... 40 2.5
4dbj|AP002799.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 2.5

>gb|AC153877.5| Mus musculus 6 BAC RP23-258E21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 232977

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 139   tgaaccaccagttttacctgg 159
             |||||||||||||||||||||
Sbjct: 15794 tgaaccaccagttttacctgg 15774



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>gb|AC154011.3| Mus musculus 6 BAC RP24-261O15 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 146781

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    tgaaccaccagttttacctgg 159
              |||||||||||||||||||||
Sbjct: 119717 tgaaccaccagttttacctgg 119697



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>gb|AC117792.6| Mus musculus chromosome 8, clone RP24-549A13, complete sequence
          Length = 174210

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    tacctgggcagttctaccat 172
              ||||||||||||||||||||
Sbjct: 100742 tacctgggcagttctaccat 100761



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>dbj|AP002799.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-806N19, complete
             sequence
          Length = 177564

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    cctttgaattgtctttgggg 31
             ||||||||||||||||||||
Sbjct: 88293 cctttgaattgtctttgggg 88312


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,632,427
Number of Sequences: 3902068
Number of extensions: 1632427
Number of successful extensions: 105724
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105720
Number of HSP's gapped (non-prelim): 4
length of query: 202
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 180
effective length of database: 17,147,199,772
effective search space: 3086495958960
effective search space used: 3086495958960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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