ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1629_HAEIN (P45280) Hypothetical protein HI1629 33 0.15
2MICA2_HUMAN (O94851) Protein MICAL-2 28 6.2
3RNZ_PORGI (Q51834) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNa... 28 6.2
4PVRL2_HUMAN (Q92692) Poliovirus receptor-related protein 2 precu... 28 8.1
5KINH_LOLPE (P21613) Kinesin heavy chain 28 8.1

>Y1629_HAEIN (P45280) Hypothetical protein HI1629|
          Length = 212

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 225 FSQFGCTGLFFFRQMHGLPSMPFSLV*GDVRRVTVCRYGWVDFCSGSCTI 76
           FSQ+G   LF  R + GL + P  +V G  RRV+  R+  +DFC+   ++
Sbjct: 119 FSQYGNRVLFVARFLPGLRA-PIYMVSGITRRVSYVRFVLIDFCAAIISV 167



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>MICA2_HUMAN (O94851) Protein MICAL-2|
          Length = 1124

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +2

Query: 41  SKEYNNNVSVSTIVHEPLQK----STHPYLQTVTRRTSPHTKENGIEGKPCICRKKNKPV 208
           SKE  N   V ++ ++ L K    + +P L    RR S      GI GKP +C     PV
Sbjct: 706 SKEGGNQNKVKSMANQLLAKFEESTRNPSLMKQERRVS------GI-GKPVLCSSSGPPV 758

Query: 209 QPNCEKDYSQT 241
              C K    T
Sbjct: 759 HSCCPKPEEAT 769



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>RNZ_PORGI (Q51834) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 304

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 3   PHTHFHLSSKTISVKNTTIMYLCPQ*YMSHCKNQPIHICKQLHV 134
           P TH H SS+ I +++   M  C +      +++ +H  + +H+
Sbjct: 16  PTTHHHPSSQVIDLRDKLYMIDCGEGVQRQFRHEKLHFGRLIHI 59



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>PVRL2_HUMAN (Q92692) Poliovirus receptor-related protein 2 precursor (Herpes|
           virus entry mediator B) (HveB) (Nectin-2) (CD112
           antigen)
          Length = 538

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  KINPSISANSYTSDVSSYQGK 159
           KINP   A SY+S   SYQGK
Sbjct: 508 KINPIYDALSYSSPSDSYQGK 528



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>KINH_LOLPE (P21613) Kinesin heavy chain|
          Length = 967

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 14  FSFVIKNNISKEYNNNVSVSTIVHEPL---QKSTHPYLQTVTRRTSPHTKENGIEGKP 178
           F  V+K N+S+EY  NV    IV + L     +   Y QT + +T  HT E G+  KP
Sbjct: 48  FDKVLKPNVSQEYVYNVGAKPIVADVLSGCNGTIFAYGQTSSGKT--HTME-GVLDKP 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,221,628
Number of Sequences: 219361
Number of extensions: 757265
Number of successful extensions: 2185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2185
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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