Clone Name | rbastl16f09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PANX1_RAT (P60570) Pannexin-1 | 29 | 2.6 | 2 | PANX1_PONPY (Q5REE3) Pannexin-1 | 29 | 2.6 | 3 | PANX1_MOUSE (Q9JIP4) Pannexin-1 | 29 | 2.6 | 4 | PANX1_HUMAN (Q96RD7) Pannexin-1 | 29 | 2.6 | 5 | SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor | 29 | 3.4 | 6 | SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor | 28 | 5.8 | 7 | FA43B_HUMAN (Q6ZT52) Protein FAM43B | 28 | 7.5 | 8 | PCDGK_HUMAN (Q9UN70) Protocadherin gamma C3 precursor (PCDH-gamm... | 27 | 9.9 |
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>PANX1_RAT (P60570) Pannexin-1| Length = 426 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 241 QLSRFQPSSFLWNPKAMMTVLCWMKI 318 Q+S F PSSF W A + CW + Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAV 88
>PANX1_PONPY (Q5REE3) Pannexin-1| Length = 426 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 241 QLSRFQPSSFLWNPKAMMTVLCWMKI 318 Q+S F PSSF W A + CW + Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAV 88
>PANX1_MOUSE (Q9JIP4) Pannexin-1| Length = 426 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 241 QLSRFQPSSFLWNPKAMMTVLCWMKI 318 Q+S F PSSF W A + CW + Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAV 88
>PANX1_HUMAN (Q96RD7) Pannexin-1| Length = 426 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +1 Query: 241 QLSRFQPSSFLWNPKAMMTVLCWMKI 318 Q+S F PSSF W A + CW + Sbjct: 63 QISCFSPSSFSWRQAAFVDSYCWAAV 88
>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor| Length = 2213 Score = 28.9 bits (63), Expect = 3.4 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +2 Query: 35 YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 211 YK+Y ++ S+ +++ LPE V K+ TS+ ++F+ AG GP +Q Sbjct: 1737 YKIYYWEADSQNETEKMKV-LFLPEPVVRLKNLTSHTKYLVSISAFNAAGDGPKSDPQQG 1795 Query: 212 YFHLLAVGFINFLAFN 259 H A G +FLAF+ Sbjct: 1796 RTHQAAPGAPSFLAFS 1811
>SDK1_MOUSE (Q3UH53) Protein sidekick-1 precursor| Length = 2193 Score = 28.1 bits (61), Expect = 5.8 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +2 Query: 35 YKVYCPKSTSRLQSKLRSCPTTLPEF*VERKS-TSYVS*R*LTASFHPAGSGPNDKKKQL 211 YKVY ++ SR +++ LPE V+ K TS+ ++F+ AG GP Q Sbjct: 1719 YKVYYWEADSRNETEKMKV-LFLPEPVVKIKDLTSHTKYLISISAFNAAGDGPKSDPCQG 1777 Query: 212 YFHLLAVGFINFLAFN 259 H A G +FLAF+ Sbjct: 1778 RTHQAAPGPPSFLAFS 1793
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +2 Query: 59 TSRLQSKLRSCPTTLPEF*VER 124 TS L S LRSCP LP++ +ER Sbjct: 30 TSLLSSFLRSCPDLLPDWPLER 51
>PCDGK_HUMAN (Q9UN70) Protocadherin gamma C3 precursor (PCDH-gamma-C3)| (Protocadherin 43) (PC-43) (Protocadherin 2) Length = 934 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 6/29 (20%) Frame = +2 Query: 173 PAGSGPNDKKKQLYFHLL------AVGFI 241 P+GS P ++KK L F+LL +VGF+ Sbjct: 678 PSGSAPREQKKNLTFYLLLSLILVSVGFV 706 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,900,812 Number of Sequences: 219361 Number of extensions: 629250 Number of successful extensions: 1500 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1481 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1500 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)