ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y4UB_RHISN (Q53196) Probable aminotransferase y4uB (EC 2.6.1.-) 28 5.2
2SYV_BUCAP (Q8K9I1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 5.2
3NUDT7_ARATH (Q9SU14) Nudix hydrolase 7 (EC 3.6.1.-) (AtNUDT7) (A... 28 6.8

>Y4UB_RHISN (Q53196) Probable aminotransferase y4uB (EC 2.6.1.-)|
          Length = 467

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 8   HNNA*GLPKKKKTTEGRREHHTIDFIIGQNKGF-FLHTTMH*PVP 139
           +NN  G P KKK     R +H    + G   G  F H  M  P+P
Sbjct: 135 YNNLRGKPTKKKIISRERGYHGCSVVSGSMTGMSFYHDHMDLPLP 179



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>SYV_BUCAP (Q8K9I1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 960

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 40  KNNGGPEGTSHHRLHYWAKQGIFSAHNN 123
           K N  P+    H  ++W K G F  +NN
Sbjct: 2   KKNYNPKDIEEHLYNFWEKNGFFKPNNN 29



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>NUDT7_ARATH (Q9SU14) Nudix hydrolase 7 (EC 3.6.1.-) (AtNUDT7) (ADP-ribose|
           pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase)
           (EC 3.6.1.22)
          Length = 282

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 15  MPEVCQKKKKQRRAGGNITPSTSLLGKTRDFFC 113
           M  +CQKK ++   G  I P+T+  GK    +C
Sbjct: 231 MANICQKKCEEEYLGFAIVPTTTSSGKESFIYC 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,844,118
Number of Sequences: 219361
Number of extensions: 483277
Number of successful extensions: 1401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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