ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 153 2e-34
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 50 0.002
3emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.52
4emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.52
5ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 2.1
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 8.2
7gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 8.2
8ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA syntheta... 38 8.2
9emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 ... 38 8.2
10gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cd... 38 8.2
11emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 8.2
12emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 8.2
13dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 8.2
14gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence 38 8.2
15gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.2
16tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform ... 38 8.2
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
18gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 8.2
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
20gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.2
21gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA syntheta... 38 8.2
22gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 8.2
23gb|AC005479.2|AC005479 Homo sapiens PAC clone RP3-449M8 from 14q... 38 8.2
24gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporte... 38 8.2
25dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
26dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.2
27emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 8.2
28gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial p... 38 8.2
29gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial p... 38 8.2
30gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporte... 38 8.2
31gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporte... 38 8.2

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  153 bits (77), Expect = 2e-34
 Identities = 86/89 (96%)
 Strand = Plus / Minus

                                                                        
Query: 80   ttcattattgggcaaaacaagggattttttctgcacacaacaatgcattgaccggtaccc 139
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                         
Query: 140  agctgagctgagcttccgcatgccgatca 168
            |||||||||||||||||||||||||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatca 2808



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 73   catcgacttcattattgggcaaaacaagggattttttctgcacac 117
            ||||||||| |||||||||||||  |||||| |||||||| ||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacac 1055



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 94    aaacaagggattttttctgca 114
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.52
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    gcaaaacaagggattttttct 111
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   ggagggaacatcacaccatc 76
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 88      tgggcaaaacaagggattt 106
               |||||||||||||||||||
Sbjct: 3842397 tgggcaaaacaagggattt 3842415



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>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 138   ccagctgagctgagcttcc 156
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



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>ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA synthetase
            (GLP_661_10786_9158) partial mRNA
          Length = 1629

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 115  cacaacaatgcattgaccg 133
            |||||||||||||||||||
Sbjct: 1215 cacaacaatgcattgaccg 1197



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>emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 in linkage group 3,
             complete sequence
          Length = 162642

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   attttttctgcacacaaca 121
             |||||||||||||||||||
Sbjct: 61311 attttttctgcacacaaca 61293



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>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced
          Length = 1285452

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      atcacaacaatgcctgagg 24
              |||||||||||||||||||
Sbjct: 705265 atcacaacaatgcctgagg 705283



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>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 91     gcaaaacaagggatttttt 109
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



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>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 91    gcaaaacaagggatttttt 109
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 103     attttttctgcacacaacaatgcattg 129
               |||||||| |||||| |||||||||||
Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082



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>gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence
          Length = 178621

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      atcacaacaatgcctgagg 24
              |||||||||||||||||||
Sbjct: 169438 atcacaacaatgcctgagg 169456



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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 88     tgggcaaaacaagggattt 106
              |||||||||||||||||||
Sbjct: 121021 tgggcaaaacaagggattt 121039



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>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene,
              alternatively spliced, complete cds
          Length = 1421559

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      atcacaacaatgcctgagg 24
              |||||||||||||||||||
Sbjct: 705265 atcacaacaatgcctgagg 705283



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 65       catcacaccatcgacttcattat 87
                |||||||||||||| ||||||||
Sbjct: 22022485 catcacaccatcgaattcattat 22022463



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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 140   agctgagctgagcttccgc 158
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 88      tgggcaaaacaagggattt 106
               |||||||||||||||||||
Sbjct: 3842508 tgggcaaaacaagggattt 3842526



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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    tgggcaaaacaagggattt 106
             |||||||||||||||||||
Sbjct: 48870 tgggcaaaacaagggattt 48888



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>gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA synthetase (proS) gene, complete cds
          Length = 1629

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 115  cacaacaatgcattgaccg 133
            |||||||||||||||||||
Sbjct: 1215 cacaacaatgcattgaccg 1197



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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 140    agctgagctgagcttccgc 158
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



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>gb|AC005479.2|AC005479 Homo sapiens PAC clone RP3-449M8 from 14q24.3, complete sequence
          Length = 140425

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 136   acccagctgagctgagctt 154
             |||||||||||||||||||
Sbjct: 98353 acccagctgagctgagctt 98371



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>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds
          Length = 3402

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 61  ggaacatcacaccatcgac 79
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 65    catcacaccatcgacttcattat 87
             |||||||||||||| ||||||||
Sbjct: 64549 catcacaccatcgaattcattat 64527



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>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
            insert sequence
          Length = 3941

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 88   tgggcaaaacaagggattt 106
            |||||||||||||||||||
Sbjct: 1147 tgggcaaaacaagggattt 1165



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 91     gcaaaacaagggatttttt 109
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377



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>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B
           mRNA, complete cds
          Length = 681

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 72  ccatcgacttcattattgg 90
           |||||||||||||||||||
Sbjct: 271 ccatcgacttcattattgg 253



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>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A
           mRNA, complete cds
          Length = 692

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 72  ccatcgacttcattattgg 90
           |||||||||||||||||||
Sbjct: 328 ccatcgacttcattattgg 310



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>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete
           cds
          Length = 3085

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 61  ggaacatcacaccatcgac 79
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete
           cds
          Length = 2703

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 61  ggaacatcacaccatcgac 79
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,191,231
Number of Sequences: 3902068
Number of extensions: 1191231
Number of successful extensions: 117386
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117198
Number of HSP's gapped (non-prelim): 188
length of query: 168
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 146
effective length of database: 17,147,199,772
effective search space: 2503491166712
effective search space used: 2503491166712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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