Clone Name | rbastl16f08 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 153 bits (77), Expect = 2e-34 Identities = 86/89 (96%) Strand = Plus / Minus Query: 80 ttcattattgggcaaaacaagggattttttctgcacacaacaatgcattgaccggtaccc 139 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 140 agctgagctgagcttccgcatgccgatca 168 ||||||||||||||||||||||||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatca 2808
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 50.1 bits (25), Expect = 0.002 Identities = 40/45 (88%) Strand = Plus / Minus Query: 73 catcgacttcattattgggcaaaacaagggattttttctgcacac 117 ||||||||| ||||||||||||| |||||| |||||||| |||| Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacac 1055
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 aaacaagggattttttctgca 114 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gcaaaacaagggattttttct 111 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin (LOC579890), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ggagggaacatcacaccatc 76 |||||||||||||||||||| Sbjct: 1457 ggagggaacatcacaccatc 1438
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 tgggcaaaacaagggattt 106 ||||||||||||||||||| Sbjct: 3842397 tgggcaaaacaagggattt 3842415
>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence Length = 187121 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 138 ccagctgagctgagcttcc 156 ||||||||||||||||||| Sbjct: 93147 ccagctgagctgagcttcc 93129
>ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA synthetase (GLP_661_10786_9158) partial mRNA Length = 1629 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 115 cacaacaatgcattgaccg 133 ||||||||||||||||||| Sbjct: 1215 cacaacaatgcattgaccg 1197
>emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 in linkage group 3, complete sequence Length = 162642 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 attttttctgcacacaaca 121 ||||||||||||||||||| Sbjct: 61311 attttttctgcacacaaca 61293
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 atcacaacaatgcctgagg 24 ||||||||||||||||||| Sbjct: 705265 atcacaacaatgcctgagg 705283
>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete sequence Length = 157981 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 gcaaaacaagggatttttt 109 ||||||||||||||||||| Sbjct: 129429 gcaaaacaagggatttttt 129411
>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence Length = 140774 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 gcaaaacaagggatttttt 109 ||||||||||||||||||| Sbjct: 89166 gcaaaacaagggatttttt 89184
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 103 attttttctgcacacaacaatgcattg 129 |||||||| |||||| ||||||||||| Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082
>gb|AC021909.7| Homo sapiens, clone RP11-22F19, complete sequence Length = 178621 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 atcacaacaatgcctgagg 24 ||||||||||||||||||| Sbjct: 169438 atcacaacaatgcctgagg 169456
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 tgggcaaaacaagggattt 106 ||||||||||||||||||| Sbjct: 121021 tgggcaaaacaagggattt 121039
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 atcacaacaatgcctgagg 24 ||||||||||||||||||| Sbjct: 705265 atcacaacaatgcctgagg 705283
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 catcacaccatcgacttcattat 87 |||||||||||||| |||||||| Sbjct: 22022485 catcacaccatcgaattcattat 22022463
>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence Length = 185162 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 140 agctgagctgagcttccgc 158 ||||||||||||||||||| Sbjct: 29471 agctgagctgagcttccgc 29453
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 tgggcaaaacaagggattt 106 ||||||||||||||||||| Sbjct: 3842508 tgggcaaaacaagggattt 3842526
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 tgggcaaaacaagggattt 106 ||||||||||||||||||| Sbjct: 48870 tgggcaaaacaagggattt 48888
>gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA synthetase (proS) gene, complete cds Length = 1629 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 115 cacaacaatgcattgaccg 133 ||||||||||||||||||| Sbjct: 1215 cacaacaatgcattgaccg 1197
>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence Length = 199128 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 140 agctgagctgagcttccgc 158 ||||||||||||||||||| Sbjct: 101444 agctgagctgagcttccgc 101426
>gb|AC005479.2|AC005479 Homo sapiens PAC clone RP3-449M8 from 14q24.3, complete sequence Length = 140425 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 acccagctgagctgagctt 154 ||||||||||||||||||| Sbjct: 98353 acccagctgagctgagctt 98371
>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds Length = 3402 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 ggaacatcacaccatcgac 79 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 65 catcacaccatcgacttcattat 87 |||||||||||||| |||||||| Sbjct: 64549 catcacaccatcgaattcattat 64527
>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full insert sequence Length = 3941 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 tgggcaaaacaagggattt 106 ||||||||||||||||||| Sbjct: 1147 tgggcaaaacaagggattt 1165
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 gcaaaacaagggatttttt 109 ||||||||||||||||||| Sbjct: 225395 gcaaaacaagggatttttt 225377
>gb|AF162335.1|AF162335 Mytilus galloprovincialis antimicrobial peptide precursor myticin B mRNA, complete cds Length = 681 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 ccatcgacttcattattgg 90 ||||||||||||||||||| Sbjct: 271 ccatcgacttcattattgg 253
>gb|AF162334.1|AF162334 Mytilus galloprovincialis antimicrobial peptide precursor myticin A mRNA, complete cds Length = 692 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 ccatcgacttcattattgg 90 ||||||||||||||||||| Sbjct: 328 ccatcgacttcattattgg 310
>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete cds Length = 3085 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 ggaacatcacaccatcgac 79 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete cds Length = 2703 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 ggaacatcacaccatcgac 79 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,191,231 Number of Sequences: 3902068 Number of extensions: 1191231 Number of successful extensions: 117386 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117198 Number of HSP's gapped (non-prelim): 188 length of query: 168 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 146 effective length of database: 17,147,199,772 effective search space: 2503491166712 effective search space used: 2503491166712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)