>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            [Contains: Transforming protein Int-3; Notch 4
            extracellular truncation; Notch 4 intracellular domain]
          Length = 1964

 Score = 34.3 bits (77), Expect = 0.078
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -3

Query: 307  CLPKTCHPTGTAGSRRLMNL*Y-----GLVGDACDIASHSRKRERCGN*G 173
            CL + CHP+GTA    L N  Y     G  G  C++     + + C N G
Sbjct: 1006 CLDRPCHPSGTAACHSLANAFYCQCLPGHTGQRCEVEMDLCQSQPCSNGG 1055

>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch 4)|
            (hNotch4) [Contains: Notch 4 extracellular truncation;
            Notch 4 intracellular domain]
          Length = 2003

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = -3

Query: 307  CLPKTCHPTGTAGSRRLMNL*Y-----GLVGDACDI 215
            CL + CHPTGTA    L N  Y     G  G  C++
Sbjct: 1010 CLDQPCHPTGTAACHSLANAFYCQCLPGHTGQWCEV 1045

>PGCB_RAT (P55068) Brevican core protein precursor (Brain-enriched|
           hyaluronan-binding protein) (BEHAB protein) [Contains:
           Brevican core protein isoform 1; Brevican core protein
           isoform 2]
          Length = 883

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -3

Query: 325 APARTHCLPKTCHPTGTA-----GSRRLMNL*YGLVGDACDIASH 206
           AP+   C+P  CH  GT      G R L    YG  GD CD+  H
Sbjct: 620 APSSGDCIPSPCHNGGTCLEEKEGFRCLCVPGYG--GDLCDVGLH 662

>PGCB_MOUSE (Q61361) Brevican core protein precursor|
          Length = 883

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -3

Query: 325 APARTHCLPKTCHPTGTA-----GSRRLMNL*YGLVGDACDIASH 206
           AP+   C+P  CH  GT      G R L    YG  GD CD+  H
Sbjct: 620 APSSGDCIPSPCHNGGTCLEEKEGFRCLCLPGYG--GDLCDVGLH 662

>PGCB_BOVIN (Q28062) Brevican core protein precursor|
          Length = 912

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -3

Query: 325 APARTHCLPKTCHPTGTA-----GSRRLMNL*YGLVGDACDIASH 206
           AP+   C+P  CH  GT      G R L    YG  GD CD+  H
Sbjct: 645 APSSGDCVPSPCHNGGTCLEEEEGVRCLCLPGYG--GDLCDVGLH 687

>DPO4_VIBPA (Q87MB4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 354

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 71  SLNFSTYDVSWSLMDDKIYISTEVYAYRLNMVSP 172
           S N STYD  W ++++K+Y   E    RL   SP
Sbjct: 254 SQNISTYDECWQVIEEKLYPELE---KRLERASP 284

>PIG1_YEAST (Q06216) Serine/threonine-protein phosphatase 1 regulatory subunit|
           PIG1
          Length = 648

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +2

Query: 44  TKQNWPTVLSLNFSTYDVSWSLMDDKIYISTEVYAYRLNMVSPALVTTSFSFARVTSNIT 223
           T  NW  +  +N + Y+ S +   D+     ++ A +LN++S  L+ T+F F R T   T
Sbjct: 244 TLNNWADIHYIN-AHYNKSVTPHVDEFKFIIDISALKLNLISKNLIYTNF-FERKT---T 298

Query: 224 CISN 235
           C+ N
Sbjct: 299 CLLN 302

>BGAL_BACST (P19668) Beta-galactosidase 1 (EC 3.2.1.23) (Beta-galactosidase I)|
           (Lactase)
          Length = 672

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 29  KAQNLTKQNWPTVLSLNFSTYDVSWSLMDDKIY 127
           + Q      W  ++ +N + Y+V+ SL +DKIY
Sbjct: 607 EVQQRETDEWKYLIIINHNDYEVTLSLPEDKIY 639

>PGCB_HUMAN (Q96GW7) Brevican core protein precursor (Brain-enriched|
           hyaluronan-binding protein) (BEHAB protein)
          Length = 911

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = -3

Query: 322 PARTHCLPKTCHPTGTA-----GSRRLMNL*YGLVGDACDI 215
           PA   C+P  CH  GT      G R L    YG  GD CD+
Sbjct: 645 PASGDCVPSPCHNGGTCLEEEEGVRCLCLPGYG--GDLCDV 683

>PAN2_YEAST (P53010) PAB-dependent poly(A)-specific ribonuclease subunit PAN2|
           (EC 3.1.13.4) (PAB1P-dependent poly(A)-nuclease)
          Length = 1115

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +2

Query: 35  QNLTKQNWPTVLSLNFSTYDVSWS-LMDDKIYISTEVYAYRLNMVSPALVTTSFSFARVT 211
           Q  T +N P+VLSL  S  D  +S +   K ++++E Y   +   + A++ ++ S  + T
Sbjct: 724 QECTVKNLPSVLSLELSLLDTEFSNIRSSKNWLTSEFYGSIIK--NKAVLRSTASELKGT 781

Query: 212 SNI 220
           S+I
Sbjct: 782 SHI 784


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,977,320
Number of Sequences: 219361
Number of extensions: 831136
Number of successful extensions: 1763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)