ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC122717.2| Homo sapiens chromosome 5 clone RP11-60H3, complete sequence Length = 120125 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 caacatcaaagctatttgaaa 107 ||||||||||||||||||||| Sbjct: 25953 caacatcaaagctatttgaaa 25973
>gb|AC159333.7| Mus musculus 10 BAC RP23-409C14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201801 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 aaatccagttttctccacata 26 ||||||||||||||||||||| Sbjct: 97707 aaatccagttttctccacata 97687
>ref|XM_223830.3| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ23834 (LOC289926), mRNA Length = 2331 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 caaatccagttttctccacat 25 ||||||||||||||||||||| Sbjct: 898 caaatccagttttctccacat 878
>ref|XM_323961.1| Neurospora crassa OR74A hypothetical protein (NCU04606.1) partial mRNA Length = 2754 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tcatcatccagagtttgggc 292 |||||||||||||||||||| Sbjct: 2077 tcatcatccagagtttgggc 2058
>ref|XM_953756.1| Neurospora crassa OR74A hypothetical protein (NCU04606.1) partial mRNA Length = 2754 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 tcatcatccagagtttgggc 292 |||||||||||||||||||| Sbjct: 2077 tcatcatccagagtttgggc 2058
>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10 Length = 161126 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tcatcatccagagtttgggc 292 |||||||||||||||||||| Sbjct: 150581 tcatcatccagagtttgggc 150600
>gb|AC015684.11| Homo sapiens chromosome 11, clone RP11-2C23, complete sequence Length = 183939 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 taatggaacttagcttcagt 83 |||||||||||||||||||| Sbjct: 136556 taatggaacttagcttcagt 136575
>ref|NM_024381.1| Rattus norvegicus glycerol kinase (Gyk), mRNA Length = 2989 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tttccaacatcaaagctatt 102 |||||||||||||||||||| Sbjct: 344 tttccaacatcaaagctatt 363
>ref|XM_579490.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_024381 (LOC497845), mRNA Length = 2985 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tttccaacatcaaagctatt 102 |||||||||||||||||||| Sbjct: 341 tttccaacatcaaagctatt 360
>gb|AY135690.1| Mus musculus argonaute 4 protein (Ago4) gene, complete cds Length = 92047 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tttctccacatacacaaaaa 34 |||||||||||||||||||| Sbjct: 52373 tttctccacatacacaaaaa 52354
>emb|Y09448.1|PV09448 P.vulgaris immature mRNA for cinnamate 4-hydroxylase, partial Length = 2280 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ccacatacacaaaaatgagt 39 |||||||||||||||||||| Sbjct: 1 ccacatacacaaaaatgagt 20
>emb|Y09447.1|PV09447 P.vulgaris mRNA for cinnamate 4-hydroxylase Length = 1799 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 ccacatacacaaaaatgagt 39 |||||||||||||||||||| Sbjct: 1 ccacatacacaaaaatgagt 20
>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete sequence Length = 213391 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tttctccacatacacaaaaa 34 |||||||||||||||||||| Sbjct: 65792 tttctccacatacacaaaaa 65811
>dbj|D16102.1|RATASTP Rattus norvegicus mRNA for ATP-stimulated glucocorticoid-receptor translocaton promoter, complete cds Length = 2989 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tttccaacatcaaagctatt 102 |||||||||||||||||||| Sbjct: 344 tttccaacatcaaagctatt 363 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,611,689 Number of Sequences: 3902068 Number of extensions: 3611689 Number of successful extensions: 69853 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69835 Number of HSP's gapped (non-prelim): 18 length of query: 336 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 314 effective length of database: 17,147,199,772 effective search space: 5384220728408 effective search space used: 5384220728408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
