ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl16e09 |
|---|---|
| Clone Library Name | barley_pub |
>YCF2_ANTFO (Q859W7) Protein ycf2| Length = 2392 Score = 30.8 bits (68), Expect = 0.87 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +2 Query: 164 REKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 295 REK T+ S+N E + Q AQ+ T ER+ +IR+ N Sbjct: 2108 REKEQTFSVSENSREIFHSSQVAQYKTKEELPYERILSRIRRRN 2151
>IF2_PSYAR (Q4FVL5) Translation initiation factor IF-2| Length = 908 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +2 Query: 116 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 295 + I RGT+ T R R K + +N+ R+ Q+AQH P E++ Y + + Sbjct: 276 REIKRGTSSTTARGRGRRKNQDEREIKNRKNGLRSSQSAQHKFEKPV--EKIVYDVEISE 333 Query: 296 Q 298 Q Sbjct: 334 Q 334
>ZN75A_HUMAN (Q96N20) Zinc finger protein 75A| Length = 296 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = +2 Query: 140 HTHVRKTNREKPYT-------YGQSQNKLEHTRTLQAAQHSTLSPC 256 HTH R EKP+T + Q+ + ++H RT Q T S C Sbjct: 233 HTHQRTHTGEKPFTCHECGKKFSQNSHLIKHRRTHTGEQPYTCSIC 278
>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1| Length = 396 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +2 Query: 128 RGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQK 301 R H+H R+T+ E+P + GQ Q + T+ LQA + ER Y R+ + Sbjct: 142 RHRGHSHQRRTSNERPGS-GQGQGRDRDTQNLQAQE--------EEREFYNARRREHR 190
>AROK_CORGL (Q9X5D1) Shikimate kinase (EC 2.7.1.71) (SK)| Length = 169 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = +2 Query: 149 VRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQKPQVAI 316 +R+T E+ Q+ + EH R L + +P E TY++R N+ PQ + Sbjct: 108 IRRTANERSRPVLQAADPAEHYRNLVKVR----TPLYEEVATYRLRTNNRSPQQVV 159
>NUP59_YEAST (Q05166) Nucleoporin ASM4 (Nuclear pore protein NUP59)| Length = 528 Score = 28.5 bits (62), Expect = 4.3 Identities = 23/98 (23%), Positives = 43/98 (43%) Frame = +1 Query: 43 NSTTRHIGNI*LSVLHQNDSVNNLPKHTQGDCPYACT*NKPRKTIHIWTITKQARAY*DL 222 N+ + +IGN ++ + + NN+ +H QG+ P N P+K T+ ++ Sbjct: 72 NNYSSNIGNNSINNNNIKNGTNNISQHGQGNNPSWV--NNPKKRFTPHTVIRR------- 122 Query: 223 ASSTAQHTQSMYKRKNDL*NSQNQPKATGSHSHKDDQH 336 T + S +ND +S N S ++D +H Sbjct: 123 --KTTKQNSSSDINQNDDSSSMNATMRNFSKQNQDSKH 158
>POLG_BCMVN (Q65399) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3066 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +1 Query: 10 EGSFQFVSAIFNSTTRHIGNI*LSVLHQNDSVNNL 114 E S +FVSA F + H+GN +++ ++ + V NL Sbjct: 973 ESSRKFVSACFMNAQTHLGNARITISNKVNEVTNL 1007
>ATP6_TRYBB (P24499) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 229 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Frame = -1 Query: 338 QCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALAC-FVIVHMCMVFLG 162 +C+S LC L FC S F L M + Y + C F++ F Sbjct: 131 ECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFFYGVFCYFILFIFVFCFCL 190 Query: 161 LFYVHAY 141 LFYV Y Sbjct: 191 LFYVFLY 197
>ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) (Beta-T) Length = 483 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = -1 Query: 329 SSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLF-Y 153 S+L +LP+ W+ + + Y D CC + R+ YA+A +I + + +F Y Sbjct: 169 SALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-YAIASSIISFYIPLLIMIFVY 227 Query: 152 VHAYGQS 132 + Y ++ Sbjct: 228 LRVYREA 234
>ILVD_RALSO (Q8XWR1) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 557 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Frame = +2 Query: 116 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTN------ERMTY 277 Q+I +G A R NR Y G + + A HST++PC + + Sbjct: 8 QHITQGVA----RSPNRSMYYALGYKKEDFSNPMIGVANGHSTITPCNSGLQKLADAAVA 63 Query: 278 KIRKTNQKPQV 310 ++ +N PQ+ Sbjct: 64 AVKASNANPQI 74
>SYGB_HELPY (P56454) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 701 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 144 RMYVKQTEKNHTHMDNHKTS*SILGPCKQHSTAHSVHVQT 263 + Y + EKNH +D K IL K+ T H + V+T Sbjct: 210 KAYFEVLEKNHVILDPKKREAKILQEIKELETKHHIIVET 249
>CSTA_ECOLI (P15078) Carbon starvation protein A| Length = 701 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -1 Query: 206 LACFVIVHMCMVFLGLFYVHAYGQSPWVCFGRLFTL 99 +ACF+I+ + + L + V A SPW + FT+ Sbjct: 165 VACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTI 200
>SPIKE_CVBV (P25194) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 310 YLWLLVGFAN---FIGHSFVCTWTECAVLC 230 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBQ (P25193) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 310 YLWLLVGFAN---FIGHSFVCTWTECAVLC 230 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBM (P15777) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 310 YLWLLVGFAN---FIGHSFVCTWTECAVLC 230 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBL9 (P25191) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 310 YLWLLVGFAN---FIGHSFVCTWTECAVLC 230 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>SPIKE_CVBF (P25190) Spike glycoprotein precursor (Peplomer protein) (E2)| [Contains: Spike protein S1 (90B); Spike protein S2 (90A)] Length = 1363 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 310 YLWLLVGFAN---FIGHSFVCTWTECAVLC 230 Y+WLL+GFA + F+C T C C Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338
>BCL6_HUMAN (P41182) B-cell lymphoma 6 protein (BCL-6) (Zinc finger protein 51)| (LAZ-3 protein) (BCL-5) (Zinc finger and BTB domain-containing protein 27) Length = 706 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/59 (23%), Positives = 25/59 (42%) Frame = +2 Query: 134 TAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQKPQV 310 T +H+R EKPY + H L+ TN ++ Y++ T+ P++ Sbjct: 644 TLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSATDLPPEL 702
>END4_MYCGE (P47477) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 291 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 19 FQFVSAIFNSTTRHIGNI*LSVLHQNDSVNN 111 F ++ +FN+ T +G L V+H N+S NN Sbjct: 192 FSDLTGVFNTITTKLGFEFLKVIHLNESKNN 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,196,817 Number of Sequences: 219361 Number of extensions: 1005098 Number of successful extensions: 2438 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2374 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2438 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
