ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCF2_ANTFO (Q859W7) Protein ycf2 31 0.87
2IF2_PSYAR (Q4FVL5) Translation initiation factor IF-2 30 1.5
3ZN75A_HUMAN (Q96N20) Zinc finger protein 75A 29 2.5
4SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1 29 2.5
5AROK_CORGL (Q9X5D1) Shikimate kinase (EC 2.7.1.71) (SK) 29 2.5
6NUP59_YEAST (Q05166) Nucleoporin ASM4 (Nuclear pore protein NUP59) 28 4.3
7POLG_BCMVN (Q65399) Genome polyprotein [Contains: P1 proteinase ... 28 4.3
8ATP6_TRYBB (P24499) ATP synthase a chain (EC 3.6.3.14) (ATPase p... 28 5.7
9ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoce... 28 5.7
10ILVD_RALSO (Q8XWR1) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 28 5.7
11SYGB_HELPY (P56454) Glycyl-tRNA synthetase beta chain (EC 6.1.1.... 28 5.7
12CSTA_ECOLI (P15078) Carbon starvation protein A 28 5.7
13SPIKE_CVBV (P25194) Spike glycoprotein precursor (Peplomer prote... 28 7.4
14SPIKE_CVBQ (P25193) Spike glycoprotein precursor (Peplomer prote... 28 7.4
15SPIKE_CVBM (P15777) Spike glycoprotein precursor (Peplomer prote... 28 7.4
16SPIKE_CVBL9 (P25191) Spike glycoprotein precursor (Peplomer prot... 28 7.4
17SPIKE_CVBF (P25190) Spike glycoprotein precursor (Peplomer prote... 28 7.4
18BCL6_HUMAN (P41182) B-cell lymphoma 6 protein (BCL-6) (Zinc fing... 27 9.7
19END4_MYCGE (P47477) Probable endonuclease 4 (EC 3.1.21.2) (Endon... 27 9.7

>YCF2_ANTFO (Q859W7) Protein ycf2|
          Length = 2392

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 164  REKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 295
            REK  T+  S+N  E   + Q AQ+ T      ER+  +IR+ N
Sbjct: 2108 REKEQTFSVSENSREIFHSSQVAQYKTKEELPYERILSRIRRRN 2151



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>IF2_PSYAR (Q4FVL5) Translation initiation factor IF-2|
          Length = 908

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 116 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTN 295
           + I RGT+ T  R   R K     + +N+    R+ Q+AQH    P   E++ Y +  + 
Sbjct: 276 REIKRGTSSTTARGRGRRKNQDEREIKNRKNGLRSSQSAQHKFEKPV--EKIVYDVEISE 333

Query: 296 Q 298
           Q
Sbjct: 334 Q 334



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>ZN75A_HUMAN (Q96N20) Zinc finger protein 75A|
          Length = 296

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = +2

Query: 140 HTHVRKTNREKPYT-------YGQSQNKLEHTRTLQAAQHSTLSPC 256
           HTH R    EKP+T       + Q+ + ++H RT    Q  T S C
Sbjct: 233 HTHQRTHTGEKPFTCHECGKKFSQNSHLIKHRRTHTGEQPYTCSIC 278



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>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1|
          Length = 396

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 128 RGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQK 301
           R   H+H R+T+ E+P + GQ Q +   T+ LQA +         ER  Y  R+   +
Sbjct: 142 RHRGHSHQRRTSNERPGS-GQGQGRDRDTQNLQAQE--------EEREFYNARRREHR 190



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>AROK_CORGL (Q9X5D1) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 169

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 149 VRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQKPQVAI 316
           +R+T  E+     Q+ +  EH R L   +    +P   E  TY++R  N+ PQ  +
Sbjct: 108 IRRTANERSRPVLQAADPAEHYRNLVKVR----TPLYEEVATYRLRTNNRSPQQVV 159



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>NUP59_YEAST (Q05166) Nucleoporin ASM4 (Nuclear pore protein NUP59)|
          Length = 528

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 23/98 (23%), Positives = 43/98 (43%)
 Frame = +1

Query: 43  NSTTRHIGNI*LSVLHQNDSVNNLPKHTQGDCPYACT*NKPRKTIHIWTITKQARAY*DL 222
           N+ + +IGN  ++  +  +  NN+ +H QG+ P     N P+K     T+ ++       
Sbjct: 72  NNYSSNIGNNSINNNNIKNGTNNISQHGQGNNPSWV--NNPKKRFTPHTVIRR------- 122

Query: 223 ASSTAQHTQSMYKRKNDL*NSQNQPKATGSHSHKDDQH 336
              T +   S    +ND  +S N      S  ++D +H
Sbjct: 123 --KTTKQNSSSDINQNDDSSSMNATMRNFSKQNQDSKH 158



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>POLG_BCMVN (Q65399) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 10   EGSFQFVSAIFNSTTRHIGNI*LSVLHQNDSVNNL 114
            E S +FVSA F +   H+GN  +++ ++ + V NL
Sbjct: 973  ESSRKFVSACFMNAQTHLGNARITISNKVNEVTNL 1007



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>ATP6_TRYBB (P24499) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 229

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = -1

Query: 338 QCWSSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALAC-FVIVHMCMVFLG 162
           +C+S LC  L      FC    S F L M       +     Y + C F++      F  
Sbjct: 131 ECFSLLCRCLSTFLRLFCNLLSSHFLLLMFFDFFYFIFVFFFYGVFCYFILFIFVFCFCL 190

Query: 161 LFYVHAY 141
           LFYV  Y
Sbjct: 191 LFYVFLY 197



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>ADRB1_MELGA (P07700) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor) (Beta-T)
          Length = 483

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 329 SSLCEWLPVAFGWFCEFYRSFFRLYMD*VCCAVLLARS*YALACFVIVHMCMVFLGLF-Y 153
           S+L  +LP+   W+ +      + Y D  CC  +  R+ YA+A  +I     + + +F Y
Sbjct: 169 SALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-YAIASSIISFYIPLLIMIFVY 227

Query: 152 VHAYGQS 132
           +  Y ++
Sbjct: 228 LRVYREA 234



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>ILVD_RALSO (Q8XWR1) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 557

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
 Frame = +2

Query: 116 QNIPRGTAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTN------ERMTY 277
           Q+I +G A    R  NR   Y  G  +    +     A  HST++PC +      +    
Sbjct: 8   QHITQGVA----RSPNRSMYYALGYKKEDFSNPMIGVANGHSTITPCNSGLQKLADAAVA 63

Query: 278 KIRKTNQKPQV 310
            ++ +N  PQ+
Sbjct: 64  AVKASNANPQI 74



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>SYGB_HELPY (P56454) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)|
           (Glycine--tRNA ligase beta chain) (GlyRS)
          Length = 701

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 144 RMYVKQTEKNHTHMDNHKTS*SILGPCKQHSTAHSVHVQT 263
           + Y +  EKNH  +D  K    IL   K+  T H + V+T
Sbjct: 210 KAYFEVLEKNHVILDPKKREAKILQEIKELETKHHIIVET 249



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>CSTA_ECOLI (P15078) Carbon starvation protein A|
          Length = 701

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 206 LACFVIVHMCMVFLGLFYVHAYGQSPWVCFGRLFTL 99
           +ACF+I+ + +  L +  V A   SPW  +   FT+
Sbjct: 165 VACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTI 200



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>SPIKE_CVBV (P25194) Spike glycoprotein precursor (Peplomer protein) (E2)|
            [Contains: Spike protein S1 (90B); Spike protein S2
            (90A)]
          Length = 1363

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 310  YLWLLVGFAN---FIGHSFVCTWTECAVLC 230
            Y+WLL+GFA     +   F+C  T C   C
Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338



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>SPIKE_CVBQ (P25193) Spike glycoprotein precursor (Peplomer protein) (E2)|
            [Contains: Spike protein S1 (90B); Spike protein S2
            (90A)]
          Length = 1363

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 310  YLWLLVGFAN---FIGHSFVCTWTECAVLC 230
            Y+WLL+GFA     +   F+C  T C   C
Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338



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>SPIKE_CVBM (P15777) Spike glycoprotein precursor (Peplomer protein) (E2)|
            [Contains: Spike protein S1 (90B); Spike protein S2
            (90A)]
          Length = 1363

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 310  YLWLLVGFAN---FIGHSFVCTWTECAVLC 230
            Y+WLL+GFA     +   F+C  T C   C
Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338



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>SPIKE_CVBL9 (P25191) Spike glycoprotein precursor (Peplomer protein) (E2)|
            [Contains: Spike protein S1 (90B); Spike protein S2
            (90A)]
          Length = 1363

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 310  YLWLLVGFAN---FIGHSFVCTWTECAVLC 230
            Y+WLL+GFA     +   F+C  T C   C
Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338



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>SPIKE_CVBF (P25190) Spike glycoprotein precursor (Peplomer protein) (E2)|
            [Contains: Spike protein S1 (90B); Spike protein S2
            (90A)]
          Length = 1363

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 310  YLWLLVGFAN---FIGHSFVCTWTECAVLC 230
            Y+WLL+GFA     +   F+C  T C   C
Sbjct: 1309 YVWLLIGFAGVAMLVLLFFICCCTGCGTSC 1338



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>BCL6_HUMAN (P41182) B-cell lymphoma 6 protein (BCL-6) (Zinc finger protein 51)|
           (LAZ-3 protein) (BCL-5) (Zinc finger and BTB
           domain-containing protein 27)
          Length = 706

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +2

Query: 134 TAHTHVRKTNREKPYTYGQSQNKLEHTRTLQAAQHSTLSPCTNERMTYKIRKTNQKPQV 310
           T  +H+R    EKPY   +      H   L+          TN ++ Y++  T+  P++
Sbjct: 644 TLKSHLRIHTGEKPYHCEKCNLHFRHKSQLRLHLRQKHGAITNTKVQYRVSATDLPPEL 702



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>END4_MYCGE (P47477) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)|
           (Endodeoxyribonuclease IV)
          Length = 291

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 19  FQFVSAIFNSTTRHIGNI*LSVLHQNDSVNN 111
           F  ++ +FN+ T  +G   L V+H N+S NN
Sbjct: 192 FSDLTGVFNTITTKLGFEFLKVIHLNESKNN 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,196,817
Number of Sequences: 219361
Number of extensions: 1005098
Number of successful extensions: 2438
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2438
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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