>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)|
          Length = 298

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 262 VCLDIANSIWSVLLCC-NKFIPQRLVGVHCLPEASVPSFFAGVCIFC*PCSVPFVLFMLH 86
           VCL +   ++ +L C  N  +   L    CL         + VC+FC  C +P  +F+LH
Sbjct: 59  VCLCLPCFVYLLLPCVSNSLLHLFLPSFACL-------LLSFVCLFCLQCVLPIPMFLLH 111

Query: 85  ALAVISCEGM 56
              V+SC  +
Sbjct: 112 ---VLSCRAL 118

>ODPA_SCHPO (Q10489) Pyruvate dehydrogenase E1 component alpha subunit,|
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
          Length = 409

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 97  TTRTVQSKVNKKYIPPQKKTVQRPLEGNGHQPIFEG*ICYSIEVPTKCCWRCRGKLIGMV 276
           TT    S+ N  ++P +     +P        +FEG   Y I+VP+      +G+L+G+ 
Sbjct: 29  TTDATTSRANPAHVPEEH---DKPFPVKLDDSVFEG---YKIDVPSTEIEVTKGELLGLY 82

Query: 277 ESMIQL 294
           E M+ +
Sbjct: 83  EKMVTI 88

>AKAP3_HUMAN (O75969) A-kinase anchor protein 3 (Protein kinase A-anchoring|
           protein 3) (PRKA3) (A-kinase anchor protein 110 kDa)
           (AKAP 110) (Sperm oocyte-binding protein)
           (Fibrousheathin I) (Fibrous sheath protein of 95 kDa)
           (FSP95)
          Length = 853

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +2

Query: 116 ARSTKNTYPRKKRRYRGLWKAMDTNQSLRDKFVTA*KYRPNAVGDVEANLLEWLKV 283
           AR     +PR+++R+RG  +  D   S+ +  +T   Y  + V D+  ++++ LK+
Sbjct: 254 AREGGRFFPRERKRFRGQERPDDFTASVSEGIMT---YANSVVSDMMVSIMKTLKI 306

>NU2M_PARTE (P15577) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 193

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 19/64 (29%), Positives = 36/64 (56%)
 Frame = -2

Query: 240 AFGRYFYAVTNLSLKDWLVSIAFQRPLYRLFLRGYVFFVDLALYRSCCLCYML*Q*FHVK 61
           +FG+YFY+ + L+L   ++++ F +        G +FF++LALY      +     F+VK
Sbjct: 13  SFGKYFYSTSFLNL--LMINLMFSK-------LGAIFFLNLALYLLALALFFFFL-FNVK 62

Query: 60  VCIV 49
           V ++
Sbjct: 63  VALL 66

>VG6_SPV1R (P15897) Gene 6 protein|
          Length = 113

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 162 LYRLFLRGYVFFVDLALYRSCCLCYML*Q*FHVKVCIVCTEHHL*LILSKTFLF 1
           + R F  G+ +F+ L  +  C +C+++   F V++ +V     L LILS   LF
Sbjct: 19  IIRNFAFGFCYFLFLISFIMCIVCFIISINFEVEIILVILFPFLLLILSVWNLF 72

>YJ8J_SCHPO (Q8J1M7) Hypothetical protein C330.19c in chromosome III|
          Length = 90

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 164 LCTVFFCGGMYFLLTLLCTVRVVYVTCFSSNF 69
           L   FFC  +YFL T L    +   TC +S F
Sbjct: 41  LLFAFFCPCIYFLHTFLADCEIAKSTCITSVF 72

>AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-beta-induced|
           apoptosis protein 3) (TAIP-3)
          Length = 583

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 299 QCNCIILSTIPISL----PRHRQQHLVGTSML*QIYPSKIGWCPLPSRGLCTV 153
           Q +C + S  P S+    PR R  H+    +    +P   G+  +PSRG CT+
Sbjct: 59  QDSCGLQSFTPPSILKRAPRERPGHVAFNGITVYYFPRCQGFTSVPSRGGCTL 111

>MBD5_HUMAN (Q9P267) Methyl-CpG-binding domain protein 5 (Methyl-CpG-binding|
            protein MBD5)
          Length = 1494

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -3

Query: 293  NCIILSTIPISLPRHRQQHLVGTSML*QIYPS 198
            N  +LS++PISLP + QQHL+  ++L  + PS
Sbjct: 915  NPSLLSSLPISLPVN-QQHLLNQNLLNILQPS 945


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,103,018
Number of Sequences: 219361
Number of extensions: 991530
Number of successful extensions: 2750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2750
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)