ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16e02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB109215.1| Hordeum vulgare BRI1 gene for putative brassinos... 80 4e-12
2dbj|AB109214.1| Hordeum vulgare subsp. spontaneum BRI1 gene for ... 80 4e-12
3dbj|AB109213.1| Hordeum vulgare BRI1 gene for putative brassinos... 80 4e-12
4dbj|AB088206.1| Hordeum vulgare BRI1 mRNA for putative brassinos... 80 4e-12
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
6dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
7dbj|AK121760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
8dbj|AK101085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
9dbj|AK073838.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
10gb|AC133004.4| Oryza sativa (japonica cultivar-group) chromosome... 44 0.23
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
12gb|AC137950.16| Mus musculus chromosome 15, clone RP24-356L7, co... 44 0.23
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.23
14gb|AC157952.2| Gallus gallus BAC clone CH261-57A7 from chromosom... 44 0.23
15emb|CT009734.9| Mouse DNA sequence from clone RP23-182E3 on chro... 42 0.89
16gb|AC126244.3| Mus musculus BAC clone RP24-319A6 from chromosome... 42 0.89
17ref|XM_659810.1| Cryptosporidium hominis TU502 hypothetical prot... 42 0.89
18gb|AC154334.2| Mus musculus BAC clone RP24-497L7 from chromosome... 42 0.89
19ref|XM_628159.1| Cryptosporidium parvum Iowa II F-actin capping ... 42 0.89
20gb|AC157822.2| Mus musculus BAC clone RP23-392J15 from chromosom... 42 0.89
21gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, comple... 42 0.89
22gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Canc... 40 3.5
23gb|AC156250.2| Xenopus tropicalis clone ISB1-258K10, complete se... 40 3.5
24gb|AC124854.2| Homo sapiens chromosome 5 clone RP11-133F8, compl... 40 3.5
25emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 3.5
26gb|AC107311.8| Homo sapiens 3 BAC RP11-576M8 (Roswell Park Cance... 40 3.5
27gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, com... 40 3.5
28gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complet... 40 3.5
29gb|AC073528.26|AC073528 Homo sapiens 12 BAC RP11-8P16 (Roswell P... 40 3.5
30gb|AC010487.7|AC010487 Homo sapiens chromosome 19 clone CTD-2331... 40 3.5
31gb|AC006487.9| Homo sapiens chromosome 17, clone RP5-1029K10, co... 40 3.5
32gb|AC073907.25| Homo sapiens 12 BAC RP11-202G24 (Roswell Park Ca... 40 3.5
33emb|AL845160.8| Mouse DNA sequence from clone RP23-303O15 on chr... 40 3.5
34emb|AL451071.3|CNS07EEZ Human chromosome 14 DNA sequence BAC R-7... 40 3.5
35emb|AL390800.4|CNS06C7R Human chromosome 14 DNA sequence BAC R-2... 40 3.5
36emb|AJ271895.1|KLA271895 Kluyveromyces lactis u1 gene and mup1 gene 40 3.5
37emb|AL935278.7| Mouse DNA sequence from clone RP23-84E1 on chrom... 40 3.5
38emb|AL669929.14| Mouse DNA sequence from clone RP23-197J15 on ch... 40 3.5 
>dbj|AB109215.1| Hordeum vulgare BRI1 gene for putative brassinosteroid-insensitive 1,
            complete cds, cultivar:Akashinriki
          Length = 3558

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 232  agcttgcgtgggaacctcagaatggtatcatcacatcatc 271
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 agcttgcgtgggaacctcagaatggtatcatcacatcatc 3519
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>dbj|AB109214.1| Hordeum vulgare subsp. spontaneum BRI1 gene for putative
            brassinosteroid-insensitive 1, complete cds, strain:H602
          Length = 3558

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 232  agcttgcgtgggaacctcagaatggtatcatcacatcatc 271
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 agcttgcgtgggaacctcagaatggtatcatcacatcatc 3519
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>dbj|AB109213.1| Hordeum vulgare BRI1 gene for putative brassinosteroid-insensitive 1,
            complete cds, cultivar:Haruna Nijo
          Length = 3558

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 232  agcttgcgtgggaacctcagaatggtatcatcacatcatc 271
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 agcttgcgtgggaacctcagaatggtatcatcacatcatc 3519
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>dbj|AB088206.1| Hordeum vulgare BRI1 mRNA for putative brassinosteroid-insensitive
            protein 1, complete cds
          Length = 3558

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 232  agcttgcgtgggaacctcagaatggtatcatcacatcatc 271
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 agcttgcgtgggaacctcagaatggtatcatcacatcatc 3519
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                            
Query: 9        aagaaaatccaccatttatatatgtacatacacagctcttactg 52
                |||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 29920891 aagaaaattcaacatttatatatgtacatacacagctcttactg 29920934
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>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480C01
          Length = 151100

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                         
Query: 9     aagaaaatccaccatttatatatgtacatacacagctcttactg 52
             |||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 65449 aagaaaattcaacatttatatatgtacatacacagctcttactg 65492
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>dbj|AK121760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089P20, full
           insert sequence
          Length = 1001

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                       
Query: 9   aagaaaatccaccatttatatatgtacatacacagctcttactg 52
           |||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 952 aagaaaattcaacatttatatatgtacatacacagctcttactg 909
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>dbj|AK101085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I12, full
            insert sequence
          Length = 3858

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 9    aagaaaatccaccatttatatatgtacatacacagctcttactg 52
            |||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3820 aagaaaattcaacatttatatatgtacatacacagctcttactg 3777
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>dbj|AK073838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069J12, full
            insert sequence
          Length = 3783

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 9    aagaaaatccaccatttatatatgtacatacacagctcttactg 52
            |||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3777 aagaaaattcaacatttatatatgtacatacacagctcttactg 3734
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>gb|AC133004.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0046F10, complete sequence
          Length = 184041

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 190   ggaaaatttcttcttatcgtgt 211
             ||||||||||||||||||||||
Sbjct: 47811 ggaaaatttcttcttatcgtgt 47790
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 190      ggaaaatttcttcttatcgtgt 211
                ||||||||||||||||||||||
Sbjct: 11129799 ggaaaatttcttcttatcgtgt 11129820
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>gb|AC137950.16| Mus musculus chromosome 15, clone RP24-356L7, complete sequence
          Length = 182058

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    catttatatatgtacatacaca 42
             ||||||||||||||||||||||
Sbjct: 95333 catttatatatgtacatacaca 95354



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    catttatatatgtacatacaca 42
             ||||||||||||||||||||||
Sbjct: 95309 catttatatatgtacatacaca 95330
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 190      ggaaaatttcttcttatcgtgt 211
                ||||||||||||||||||||||
Sbjct: 11208988 ggaaaatttcttcttatcgtgt 11209009
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>gb|AC157952.2| Gallus gallus BAC clone CH261-57A7 from chromosome unknown, complete
              sequence
          Length = 216788

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 21     catttatatatgtacatacaca 42
              ||||||||||||||||||||||
Sbjct: 176647 catttatatatgtacatacaca 176626
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>emb|CT009734.9| Mouse DNA sequence from clone RP23-182E3 on chromosome 14, complete
              sequence
          Length = 202398

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     atttatatatgtacatacaca 42
              |||||||||||||||||||||
Sbjct: 149277 atttatatatgtacatacaca 149297
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>gb|AC126244.3| Mus musculus BAC clone RP24-319A6 from chromosome 12, complete sequence
          Length = 175549

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    atttatatatgtacatacaca 42
             |||||||||||||||||||||
Sbjct: 89085 atttatatatgtacatacaca 89065
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>ref|XM_659810.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.10387)
           partial mRNA
          Length = 870

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 14  aatccaccatttatatatgta 34
           |||||||||||||||||||||
Sbjct: 230 aatccaccatttatatatgta 210
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>gb|AC154334.2| Mus musculus BAC clone RP24-497L7 from chromosome 14, complete sequence
          Length = 127819

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    atttatatatgtacatacaca 42
             |||||||||||||||||||||
Sbjct: 88814 atttatatatgtacatacaca 88794
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>ref|XM_628159.1| Cryptosporidium parvum Iowa II F-actin capping protein (cgd1_3460),
           partial mRNA
          Length = 960

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 14  aatccaccatttatatatgta 34
           |||||||||||||||||||||
Sbjct: 320 aatccaccatttatatatgta 300
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>gb|AC157822.2| Mus musculus BAC clone RP23-392J15 from chromosome 12, complete
             sequence
          Length = 185536

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    atttatatatgtacatacaca 42
             |||||||||||||||||||||
Sbjct: 69713 atttatatatgtacatacaca 69693
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>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence
          Length = 166104

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atttatatatgtacatacaca 42
             |||||||||||||||||||||
Sbjct: 33688 atttatatatgtacatacaca 33708
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>gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 194848

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     tttatatatgtacatacaca 42
              ||||||||||||||||||||
Sbjct: 143657 tttatatatgtacatacaca 143676
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>gb|AC156250.2| Xenopus tropicalis clone ISB1-258K10, complete sequence
          Length = 79665

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgtacatacacagctctta 49
             ||||||||||||||||||||
Sbjct: 75082 atgtacatacacagctctta 75063
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>gb|AC124854.2| Homo sapiens chromosome 5 clone RP11-133F8, complete sequence
          Length = 149205

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     tttatatatgtacatacaca 42
              ||||||||||||||||||||
Sbjct: 132455 tttatatatgtacatacaca 132436
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 1753957

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 13      aaatccaccatttatatatgtacataca 40
               ||||||| ||| ||||||||||||||||
Sbjct: 1639321 aaatccagcatctatatatgtacataca 1639348
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>gb|AC107311.8| Homo sapiens 3 BAC RP11-576M8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192233

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     tttatatatgtacatacaca 42
              ||||||||||||||||||||
Sbjct: 101146 tttatatatgtacatacaca 101165
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>gb|AC008813.6| Homo sapiens chromosome 19 clone CTD-2102P23, complete sequence
          Length = 162914

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    tttatatatgtacatacaca 42
             ||||||||||||||||||||
Sbjct: 11829 tttatatatgtacatacaca 11848
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>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence
          Length = 187332

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    ttatatatgtacatacacag 43
             ||||||||||||||||||||
Sbjct: 62044 ttatatatgtacatacacag 62063
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>gb|AC073528.26|AC073528 Homo sapiens 12 BAC RP11-8P16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167041

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tatatatgtacatacacagc 44
              ||||||||||||||||||||
Sbjct: 137252 tatatatgtacatacacagc 137271
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>gb|AC010487.7|AC010487 Homo sapiens chromosome 19 clone CTD-2331H12, complete sequence
          Length = 102341

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   tttatatatgtacatacaca 42
            ||||||||||||||||||||
Sbjct: 1188 tttatatatgtacatacaca 1169
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>gb|AC006487.9| Homo sapiens chromosome 17, clone RP5-1029K10, complete sequence
          Length = 186617

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   acgagagctacaagggaggg 191
             ||||||||||||||||||||
Sbjct: 29837 acgagagctacaagggaggg 29818
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>gb|AC073907.25| Homo sapiens 12 BAC RP11-202G24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 135245

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    tatatatgtacatacacagc 44
             ||||||||||||||||||||
Sbjct: 97759 tatatatgtacatacacagc 97740
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>emb|AL845160.8| Mouse DNA sequence from clone RP23-303O15 on chromosome 2, complete
              sequence
          Length = 170074

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     tttatatatgtacatacaca 42
              ||||||||||||||||||||
Sbjct: 115389 tttatatatgtacatacaca 115370
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>emb|AL451071.3|CNS07EEZ Human chromosome 14 DNA sequence BAC R-779M2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200109

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     tttatatatgtacatacaca 42
              ||||||||||||||||||||
Sbjct: 137047 tttatatatgtacatacaca 137028
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>emb|AL390800.4|CNS06C7R Human chromosome 14 DNA sequence BAC R-254B15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169029

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     tttatatatgtacatacaca 42
              ||||||||||||||||||||
Sbjct: 160645 tttatatatgtacatacaca 160664
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>emb|AJ271895.1|KLA271895 Kluyveromyces lactis u1 gene and mup1 gene
          Length = 2744

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 13  aaatccaccatttatatatgtacataca 40
           ||||||| ||| ||||||||||||||||
Sbjct: 849 aaatccagcatctatatatgtacataca 876
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>emb|AL935278.7| Mouse DNA sequence from clone RP23-84E1 on chromosome 2, complete
             sequence
          Length = 183353

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    tatatatgtacatacacagc 44
             ||||||||||||||||||||
Sbjct: 40681 tatatatgtacatacacagc 40700
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>emb|AL669929.14| Mouse DNA sequence from clone RP23-197J15 on chromosome X, complete
              sequence
          Length = 204206

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     tttatatatgtacatacaca 42
              ||||||||||||||||||||
Sbjct: 176928 tttatatatgtacatacaca 176947


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,949,302
Number of Sequences: 3902068
Number of extensions: 1949302
Number of successful extensions: 52648
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52517
Number of HSP's gapped (non-prelim): 131
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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