ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SMS_MACFA (P61279) Somatostatin precursor [Contains: Somatostati... 27 9.2
2SMS_HUMAN (P61278) Somatostatin precursor (Growth hormone releas... 27 9.2

>SMS_MACFA (P61279) Somatostatin precursor [Contains: Somatostatin-28;|
           Somatostatin-14]
          Length = 116

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 158 IVDCRWTCCLAVVSFIVFIYCYSGRFCESKILNVPSIRLMIYANEQHLAE 9
           ++ CR  C LA +S ++ + C +G   + ++       L   A +Q LA+
Sbjct: 1   MLSCRLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAK 50



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>SMS_HUMAN (P61278) Somatostatin precursor (Growth hormone release-inhibiting|
           factor) [Contains: Somatostatin-28; Somatostatin-14]
          Length = 116

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 158 IVDCRWTCCLAVVSFIVFIYCYSGRFCESKILNVPSIRLMIYANEQHLAE 9
           ++ CR  C LA +S ++ + C +G   + ++       L   A +Q LA+
Sbjct: 1   MLSCRLQCALAALSIVLALGCVTGAPSDPRLRQFLQKSLAAAAGKQELAK 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,797,075
Number of Sequences: 219361
Number of extensions: 637692
Number of successful extensions: 1309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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