ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TS1R1_HUMAN (Q7RTX1) Taste receptor type 1 member 1 precursor (G... 33 0.19
2OXAA_HAEDU (Q7VPM2) Inner membrane protein oxaA 30 1.3
3CAF5_SCHPO (O94528) Caffeine resistance protein 5 30 2.1
4OXAA_PASMU (Q9CLQ2) Inner membrane protein oxaA 29 2.8
5OXAA_HAEIN (P44973) Inner membrane protein oxaA 29 2.8
6TS1R1_MOUSE (Q99PG6) Taste receptor type 1 member 1 precursor (G... 29 3.6

>TS1R1_HUMAN (Q7RTX1) Taste receptor type 1 member 1 precursor (G-protein|
           coupled receptor 70) (Gm148)
          Length = 841

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 168 EETKWVIWQCF*VGSLFLLGPTGIFVWKLILPLFFADGGDVTFI 37
           E T WV+     +  L LLG  G+F W L  P+  + GG + F+
Sbjct: 564 EHTSWVLLAANTLLLLLLLGTAGLFAWHLDTPVVRSAGGRLCFL 607



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>OXAA_HAEDU (Q7VPM2) Inner membrane protein oxaA|
          Length = 536

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 163 N*MGNLAVLLSRLSVFIGTYWHF--CLEVDTAPFFCGW 56
           N MG    L+ ++ +FI  YW F   +E+  APFF GW
Sbjct: 409 NPMGGCLPLILQMPIFIALYWTFMEAVELRHAPFF-GW 445



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>CAF5_SCHPO (O94528) Caffeine resistance protein 5|
          Length = 531

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 132 VGSLFLLGPTGIFVWKLILPLFFADGGD 49
           VG+L  L    +F++K+++P F A GGD
Sbjct: 365 VGALITLACYFVFLYKVMIPAFMASGGD 392



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>OXAA_PASMU (Q9CLQ2) Inner membrane protein oxaA|
          Length = 541

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 163 N*MGNLAVLLSRLSVFIGTYWHF--CLEVDTAPFFCGW 56
           N +G    +L ++ +FI  YW F   +E+  APFF GW
Sbjct: 414 NPLGGCLPILLQMPIFIALYWTFLEAVELRHAPFF-GW 450



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>OXAA_HAEIN (P44973) Inner membrane protein oxaA|
          Length = 541

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 163 N*MGNLAVLLSRLSVFIGTYWHF--CLEVDTAPFFCGW 56
           N +G    +L ++ +FI  YW F   +E+  APFF GW
Sbjct: 414 NPLGGCLPILLQMPIFIALYWTFLEAVELRHAPFF-GW 450



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>TS1R1_MOUSE (Q99PG6) Taste receptor type 1 member 1 precursor (G-protein|
           coupled receptor 70)
          Length = 842

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 123 LFLLGPTGIFVWKLILPLFFADGGDVTFI 37
           L L+G  G+F W+L  P+  + GG + F+
Sbjct: 580 LLLIGTAGLFAWRLHTPVVRSAGGRLCFL 608


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,599,017
Number of Sequences: 219361
Number of extensions: 729553
Number of successful extensions: 2081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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