>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 162 tttcttctcagcctcaccgatgacccgcagttgctcaaaaaaggcggggagcttcctcat 221
           |||||||||||| |||| |||||||   |||||||| || || |||| ||||||||||||
Sbjct: 796 tttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttcctcat 737

                    
Query: 222 gtcctcctc 230
           |||||||||
Sbjct: 736 gtcctcctc 728

>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence
          Length = 1244

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 162 tttcttctcagcctcaccgatgacccgcagttgctcaaaaaaggcggggagcttcctcat 221
           |||||||||||| |||| |||||||   ||||| || || || ||||||||||| |||||
Sbjct: 948 tttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagctttctcat 889

                    
Query: 222 gtcctcctc 230
           |||||||||
Sbjct: 888 gtcctcctc 880

>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 162 tttcttctcagcctcaccgatgacccgcagttgctcaaaaaaggcggggagcttcctcat 221
           |||||||||||| |||| |||||||   ||||| || || || |||| |||||| |||||
Sbjct: 451 tttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagctttctcat 510

                    
Query: 222 gtcctcctc 230
           |||||||||
Sbjct: 511 gtcctcctc 519

>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186915

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 26     tttgaattttctataaatgtgacatca 52
              |||||| ||||||||||||||||||||
Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188

>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 24    catttgaattttctataaatgt 45
             ||||||||||||||||||||||
Sbjct: 75708 catttgaattttctataaatgt 75687

>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc
            in-between-RING-finger ubiquitin-associated domain
            protein) (LOC480259), mRNA
          Length = 3490

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 173  cctcaccgatgacccgcagttgctca 198
            ||||||||||||| ||||||||||||
Sbjct: 2442 cctcaccgatgacacgcagttgctca 2467

>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    atttgaattttctataaatgt 45
             |||||||||||||||||||||
Sbjct: 74176 atttgaattttctataaatgt 74196

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 79      tatcaacttccaaacaaaaat 99
               |||||||||||||||||||||
Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822

>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     tatcaacttccaaacaaaaat 99
              |||||||||||||||||||||
Sbjct: 120044 tatcaacttccaaacaaaaat 120064

>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    tatcaacttccaaacaaaaat 99
             |||||||||||||||||||||
Sbjct: 26437 tatcaacttccaaacaaaaat 26457

>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
              sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     aatgtgacatcaccaccatcc 61
              |||||||||||||||||||||
Sbjct: 140982 aatgtgacatcaccaccatcc 141002

>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ccatttgaattttctataaa 42
             ||||||||||||||||||||
Sbjct: 23208 ccatttgaattttctataaa 23189

>gb|AC127294.4| Mus musculus BAC clone RP23-386L1 from chromosome 3, complete sequence
          Length = 212556

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 95     aaaatgccagtaggtcccaataaa 118
              ||||||||||||| ||||||||||
Sbjct: 119237 aaaatgccagtagatcccaataaa 119260

>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    aacttccaaacaaaaatgcc 102
             ||||||||||||||||||||
Sbjct: 16747 aacttccaaacaaaaatgcc 16766

>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence
          Length = 15122

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   aacttccaaacaaaaatgcc 102
            ||||||||||||||||||||
Sbjct: 3649 aacttccaaacaaaaatgcc 3668

>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the
             3' end of the Col27a1 gene for procollagen type XXVII
             alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1,
             2 and 3, an orosomucoid pseudogene, the gene for a novel
             protein similar to human AT-hook protein AKNA, gene
             4933437N03Rik, the Whrn gene for whirlin and two CpG
             islands, complete sequence
          Length = 214370

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gagcttcctcatgtcctcct 229
             ||||||||||||||||||||
Sbjct: 31754 gagcttcctcatgtcctcct 31735

>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   gcttcctcatgtcctcctct 231
             ||||||||||||||||||||
Sbjct: 23507 gcttcctcatgtcctcctct 23526

>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA
            (Snap), mRNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1762 gaattttctataaatgtgac 1743

>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185918

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gaattttctataaatgtgac 48
              ||||||||||||||||||||
Sbjct: 106242 gaattttctataaatgtgac 106223

>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence
          Length = 168521

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   attttctataaatgtgacat 50
            ||||||||||||||||||||
Sbjct: 1961 attttctataaatgtgacat 1980

>gb|BC089958.1| Rattus norvegicus ATPase, H+ transporting, V0 subunit E isoform 2,
           mRNA (cDNA clone MGC:109294 IMAGE:7312897), complete cds
          Length = 1619

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 gattacccatttagtttctt 167
           ||||||||||||||||||||
Sbjct: 775 gattacccatttagtttctt 794

>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence
          Length = 195483

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aacttccaaacaaaaatgcc 102
              ||||||||||||||||||||
Sbjct: 160602 aacttccaaacaaaaatgcc 160621

>ref|NM_001002253.1| Rattus norvegicus ATPase, H+ transporting, V0 subunit E isoform 2
           (Atp6v0e2), mRNA
          Length = 862

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 148 gattacccatttagtttctt 167
           ||||||||||||||||||||
Sbjct: 823 gattacccatttagtttctt 842

>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tgaattttctataaatgtga 47
              ||||||||||||||||||||
Sbjct: 121095 tgaattttctataaatgtga 121076

>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172507

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     catttgaattttctataaat 43
              ||||||||||||||||||||
Sbjct: 161099 catttgaattttctataaat 161080

>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence
          Length = 155354

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    attttctataaatgtgacat 50
             ||||||||||||||||||||
Sbjct: 23774 attttctataaatgtgacat 23793

>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
            6430402L03 (LOC302412), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 213  cttcctcatgtcctcctctt 232
            ||||||||||||||||||||
Sbjct: 1005 cttcctcatgtcctcctctt 986

>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1730 gaattttctataaatgtgac 1711

>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    atgtgacatcaccaccatcc 61
             ||||||||||||||||||||
Sbjct: 71007 atgtgacatcaccaccatcc 71026

>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gaattttctataaatgtgac 48
              ||||||||||||||||||||
Sbjct: 288396 gaattttctataaatgtgac 288377

>dbj|AK116643.1| Ciona intestinalis cDNA, clone:ciad036l23, full insert sequence
          Length = 3646

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 207  ggggagcttcctcatgtcct 226
            ||||||||||||||||||||
Sbjct: 1697 ggggagcttcctcatgtcct 1716

>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tgaattttctataaatgtga 47
             ||||||||||||||||||||
Sbjct: 63377 tgaattttctataaatgtga 63358

>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete
            cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1718 gaattttctataaatgtgac 1699

>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
              sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     tttgaattttctataaatgt 45
              ||||||||||||||||||||
Sbjct: 104442 tttgaattttctataaatgt 104461


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,960,214
Number of Sequences: 3902068
Number of extensions: 2960214
Number of successful extensions: 56782
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56711
Number of HSP's gapped (non-prelim): 71
length of query: 255
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 233
effective length of database: 17,147,199,772
effective search space: 3995297546876
effective search space used: 3995297546876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)