ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108358.1| Zea mays PCO106869 mRNA sequence 66 5e-08
2emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4,... 54 2e-04
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
4dbj|AK073992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
5emb|AL662965.3|OSJN00167 Oryza sativa genomic DNA, chromosome 4,... 54 2e-04
6gb|AC084301.12| Homo sapiens 3 BAC RP11-203F4 (Roswell Park Canc... 44 0.20
7gb|AC111028.10| Mus musculus chromosome 8, clone RP23-221P20, co... 42 0.78
8gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, co... 42 0.78
9emb|AL035423.4|HS20I3 Human DNA sequence from clone RP1-20I3 on ... 42 0.78
10gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosom... 42 0.78
11gb|AY113518.1| Drosophila melanogaster RE59956 full insert cDNA 42 0.78
12ref|NM_136058.3| Drosophila melanogaster Grip71 CG10346-RA (Grip... 42 0.78
13gb|AY070955.1| Drosophila melanogaster RE05579 full length cDNA 42 0.78
14gb|AC009203.5|AC009203 Drosophila melanogaster, chromosome 2L, r... 42 0.78
15gb|BT024418.1| Drosophila melanogaster IP03305 full insert cDNA 42 0.78
16gb|AC007137.20|AC007137 Drosophila melanogaster, chromosome 2L, ... 42 0.78
17gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69... 42 0.78
18gb|AC154329.3| Mus musculus BAC clone RP23-266K11 from chromosom... 42 0.78
19gb|AY520574.1| Enteromyxum leei small subunit ribosomal RNA gene... 40 3.1
20gb|AY520573.1| Enteromyxum fugu small subunit ribosomal RNA gene... 40 3.1
21gb|AC165441.3| Mus musculus BAC clone RP24-548F24 from chromosom... 40 3.1
22gb|AY608916.1| Bos taurus clone OPF101168 male-specific genomic ... 40 3.1
23gb|DQ139796.1| Enteromyxum leei 18S ribosomal RNA gene, partial ... 40 3.1
24gb|AY604199.1| Chloromyxum leydigi small subunit ribosomal RNA g... 40 3.1
25gb|DQ127230.1| Enteromyxum leei 18S ribosomal RNA gene, partial ... 40 3.1
26gb|AC140298.3| Mus musculus BAC clone RP24-319I6 from chromosome... 40 3.1
27gb|AC121965.3| Mus musculus BAC clone RP24-262G23 from chromosom... 40 3.1
28gb|AC105256.7| Mus musculus BAC clone RP23-413O13 from chromosom... 40 3.1
29gb|AF411471.1| Ceratomyxa sparusaurati 18S ribosomal RNA gene, p... 40 3.1
30gb|AC122033.5| Mus musculus BAC clone RP24-403A7 from chromosome... 40 3.1
31gb|AC126254.3| Mus musculus BAC clone RP24-132D17 from chromosom... 40 3.1
32gb|AF411335.1| Enteromyxum scophthalmi 18S small subunit ribosom... 40 3.1
33gb|AF411334.1| Enteromyxum leei 18S small subunit ribosomal RNA ... 40 3.1
34dbj|AB243447.1| Enteromyxum leei gene for small subunit ribosoma... 40 3.1
35gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, compl... 40 3.1
36gb|AC104339.10| Homo sapiens chromosome 8, clone RP11-777J24, co... 40 3.1
37dbj|AP003499.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.1
38emb|AL928594.11| Mouse DNA sequence from clone RP23-35H8 on chro... 40 3.1
39gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, compl... 40 3.1
40gb|AC164414.5| Mus musculus chromosome 1, clone RP24-75E15, comp... 40 3.1 
>gb|AY108358.1| Zea mays PCO106869 mRNA sequence
          Length = 1058

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 166  caataattacaaggctcaaaacttacaacacaacaca 202
            ||||||||||| |||||||||||||||||||||||||
Sbjct: 1004 caataattacatggctcaaaacttacaacacaacaca 968
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>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15,
             complete sequence
          Length = 137874

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                
Query: 169   taattacaaggctcaaaacttacaacacaacacat 203
             ||||||||||||||||| |||||||||||||||||
Sbjct: 37795 taattacaaggctcaaa-cttacaacacaacacat 37762
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                  
Query: 169     taattacaaggctcaaaacttacaacacaacacat 203
               ||||||||||||||||| |||||||||||||||||
Sbjct: 6483547 taattacaaggctcaaa-cttacaacacaacacat 6483514
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>dbj|AK073992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072G13, full
            insert sequence
          Length = 3216

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                               
Query: 169  taattacaaggctcaaaacttacaacacaacacat 203
            ||||||||||||||||| |||||||||||||||||
Sbjct: 3033 taattacaaggctcaaa-cttacaacacaacacat 3000
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>emb|AL662965.3|OSJN00167 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17,
              complete sequence
          Length = 147548

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 34/35 (97%), Gaps = 1/35 (2%)
 Strand = Plus / Minus

                                                 
Query: 169    taattacaaggctcaaaacttacaacacaacacat 203
              ||||||||||||||||| |||||||||||||||||
Sbjct: 145696 taattacaaggctcaaa-cttacaacacaacacat 145663
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>gb|AC084301.12| Homo sapiens 3 BAC RP11-203F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172875

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 74    aaatttacataaaactcatgac 95
             ||||||||||||||||||||||
Sbjct: 22449 aaatttacataaaactcatgac 22470
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>gb|AC111028.10| Mus musculus chromosome 8, clone RP23-221P20, complete sequence
          Length = 193256

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   attgttgttacatatatgtat 149
             |||||||||||||||||||||
Sbjct: 40210 attgttgttacatatatgtat 40230
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>gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, complete sequence
          Length = 171912

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   attgttgttacatatatgtat 149
             |||||||||||||||||||||
Sbjct: 17989 attgttgttacatatatgtat 18009
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>emb|AL035423.4|HS20I3 Human DNA sequence from clone RP1-20I3 on chromosome Xq25-26 Contains
            a SNRPN upstream reading frame (SNURF) pseudogene, the
            SLC25A14 gene for solute carrier family 25 (mitochondrial
            carrier, brain),member 14 (UCP5, BMCP1), the gene for
            G-protein coupled receptor 2 (GPCR2), the gene for CGI-79
            protein and a CpG island, complete sequence
          Length = 140094

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  tcaaaacttacaacacaacac 201
            |||||||||||||||||||||
Sbjct: 7063 tcaaaacttacaacacaacac 7043
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>gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosome 1, complete sequence
          Length = 147442

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   attgttgttacatatatgtat 149
             |||||||||||||||||||||
Sbjct: 87408 attgttgttacatatatgtat 87428
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>gb|AY113518.1| Drosophila melanogaster RE59956 full insert cDNA
          Length = 2285

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 74   aaatttacataaaactcatga 94
            |||||||||||||||||||||
Sbjct: 2156 aaatttacataaaactcatga 2136
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>ref|NM_136058.3| Drosophila melanogaster Grip71 CG10346-RA (Grip71), mRNA
          Length = 2281

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 74   aaatttacataaaactcatga 94
            |||||||||||||||||||||
Sbjct: 2159 aaatttacataaaactcatga 2139
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>gb|AY070955.1| Drosophila melanogaster RE05579 full length cDNA
          Length = 2285

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 74   aaatttacataaaactcatga 94
            |||||||||||||||||||||
Sbjct: 2156 aaatttacataaaactcatga 2136
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>gb|AC009203.5|AC009203 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone
            BACR07J05, complete sequence
          Length = 172061

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 74   aaatttacataaaactcatga 94
            |||||||||||||||||||||
Sbjct: 8321 aaatttacataaaactcatga 8301
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>gb|BT024418.1| Drosophila melanogaster IP03305 full insert cDNA
          Length = 1807

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   aaatttacataaaactcatga 94
            |||||||||||||||||||||
Sbjct: 1676 aaatttacataaaactcatga 1696
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>gb|AC007137.20|AC007137 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR25C02,
              complete sequence
          Length = 171454

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     aaatttacataaaactcatga 94
              |||||||||||||||||||||
Sbjct: 147923 aaatttacataaaactcatga 147903
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>gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69 of 83 of the complete
             sequence
          Length = 232737

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 74    aaatttacataaaactcatga 94
             |||||||||||||||||||||
Sbjct: 34081 aaatttacataaaactcatga 34061
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>gb|AC154329.3| Mus musculus BAC clone RP23-266K11 from chromosome 13, complete
            sequence
          Length = 188096

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  attgttgttacatatatgtat 149
            |||||||||||||||||||||
Sbjct: 7537 attgttgttacatatatgtat 7517
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>gb|AY520574.1| Enteromyxum leei small subunit ribosomal RNA gene, partial sequence
          Length = 1588

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1497 gcaataattacaaggctcaa 1478
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>gb|AY520573.1| Enteromyxum fugu small subunit ribosomal RNA gene, partial sequence
          Length = 1590

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1496 gcaataattacaaggctcaa 1477
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>gb|AC165441.3| Mus musculus BAC clone RP24-548F24 from chromosome 8, complete sequence
          Length = 235813

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    ttgttgttacatatatgtat 149
              ||||||||||||||||||||
Sbjct: 127510 ttgttgttacatatatgtat 127529
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>gb|AY608916.1| Bos taurus clone OPF101168 male-specific genomic sequence
          Length = 1168

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 197 aacacatcagaatatggacagctc 220
           |||||||||||| |||||||||||
Sbjct: 74  aacacatcagaagatggacagctc 51
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>gb|DQ139796.1| Enteromyxum leei 18S ribosomal RNA gene, partial sequence
          Length = 1588

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1497 gcaataattacaaggctcaa 1478
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>gb|AY604199.1| Chloromyxum leydigi small subunit ribosomal RNA gene, complete
            sequence
          Length = 1868

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1638 gcaataattacaaggctcaa 1619
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>gb|DQ127230.1| Enteromyxum leei 18S ribosomal RNA gene, partial sequence
          Length = 1588

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1497 gcaataattacaaggctcaa 1478
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>gb|AC140298.3| Mus musculus BAC clone RP24-319I6 from chromosome 18, complete sequence
          Length = 148703

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   attgttgttacatatatgta 148
             ||||||||||||||||||||
Sbjct: 86322 attgttgttacatatatgta 86341
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>gb|AC121965.3| Mus musculus BAC clone RP24-262G23 from chromosome 12, complete sequence
          Length = 170835

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    cagctcccccctcaaagaat 122
              ||||||||||||||||||||
Sbjct: 149131 cagctcccccctcaaagaat 149150
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>gb|AC105256.7| Mus musculus BAC clone RP23-413O13 from chromosome 8, complete sequence
          Length = 210086

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 125    acctattgttgttacatata 144
              ||||||||||||||||||||
Sbjct: 130309 acctattgttgttacatata 130290
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>gb|AF411471.1| Ceratomyxa sparusaurati 18S ribosomal RNA gene, partial sequence
          Length = 1741

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1650 gcaataattacaaggctcaa 1631
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>gb|AC122033.5| Mus musculus BAC clone RP24-403A7 from chromosome 17, complete sequence
          Length = 119877

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   cagctcccccctcaaagaat 122
             ||||||||||||||||||||
Sbjct: 95398 cagctcccccctcaaagaat 95417
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>gb|AC126254.3| Mus musculus BAC clone RP24-132D17 from chromosome 17, complete sequence
          Length = 167995

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    cagctcccccctcaaagaat 122
              ||||||||||||||||||||
Sbjct: 164601 cagctcccccctcaaagaat 164582
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>gb|AF411335.1| Enteromyxum scophthalmi 18S small subunit ribosomal RNA gene, partial
            sequence
          Length = 1609

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1518 gcaataattacaaggctcaa 1499
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>gb|AF411334.1| Enteromyxum leei 18S small subunit ribosomal RNA gene, partial
            sequence
          Length = 1589

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1498 gcaataattacaaggctcaa 1479
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>dbj|AB243447.1| Enteromyxum leei gene for small subunit ribosomal RNA, partial
            sequence
          Length = 1588

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 165  gcaataattacaaggctcaa 184
            ||||||||||||||||||||
Sbjct: 1497 gcaataattacaaggctcaa 1478
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>gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, complete sequence
          Length = 176418

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 127   ctattgttgttacatatatgtatc 150
             ||||||||||||||||||| ||||
Sbjct: 16048 ctattgttgttacatatatttatc 16025
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>gb|AC104339.10| Homo sapiens chromosome 8, clone RP11-777J24, complete sequence
          Length = 194212

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 127    ctattgttgttacatatatgtatc 150
              ||||||||||||||||||| ||||
Sbjct: 134890 ctattgttgttacatatatttatc 134867
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>dbj|AP003499.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-178H8, complete
             sequence
          Length = 193227

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   ttgttgttacatatatgtat 149
             ||||||||||||||||||||
Sbjct: 49521 ttgttgttacatatatgtat 49502
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>emb|AL928594.11| Mouse DNA sequence from clone RP23-35H8 on chromosome X, complete
              sequence
          Length = 204635

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    ttgttgttacatatatgtat 149
              ||||||||||||||||||||
Sbjct: 202500 ttgttgttacatatatgtat 202481
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>gb|AC122538.4| Mus musculus BAC clone RP24-548J11 from 16, complete sequence
          Length = 209585

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 77     tttacataaaactcatgacgagga 100
              |||||||||||||||| |||||||
Sbjct: 102065 tttacataaaactcatcacgagga 102042
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>gb|AC164414.5| Mus musculus chromosome 1, clone RP24-75E15, complete sequence
          Length = 213369

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    ttgttgttacatatatgtat 149
              ||||||||||||||||||||
Sbjct: 111165 ttgttgttacatatatgtat 111146


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,113,753
Number of Sequences: 3902068
Number of extensions: 2113753
Number of successful extensions: 47450
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47369
Number of HSP's gapped (non-prelim): 77
length of query: 239
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 217
effective length of database: 17,147,199,772
effective search space: 3720942350524
effective search space used: 3720942350524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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