Clone Name | rbastl16d08 |
---|---|
Clone Library Name | barley_pub |
>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating| enzyme subunit 2) (Anthracycline-associated resistance ARX) Length = 640 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/37 (35%), Positives = 25/37 (67%) Frame = -3 Query: 384 NGADESAEPASDGAQDEHVGEQMDTDKDDPSQA*EVS 274 NG+D+ A+P++ AQ++ +D+D++D S +VS Sbjct: 568 NGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVS 604
>FADB_SHEON (Q8EKR9) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 716 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 67 KPQLFC-MHLPNVVKEKPLLEEAKTSRNTAETL-HVLLISSQRMKTAI 204 KP+ FC MH N V + PL+E + ++ ET+ V+ +S+ KT I Sbjct: 442 KPERFCGMHFFNPVHKMPLVEVIRGEHSSEETIASVVAYASKMGKTPI 489
>YAD7_YEAST (P39728) Hypothetical 30.5 kDa protein in PYK1-SNC1 intergenic| region Length = 267 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +2 Query: 149 LQKLSM-FYSYPHNV*KQPFLLSP*QAKSTIAQPIMDIKSPQIDTSYAWEGSSLSVSICS 325 LQKL Y P + QP LL K I + K T Y +S+ V++CS Sbjct: 16 LQKLDTNVYFGPCEILTQPILLQYENIKFIIGVNLSTEKIASFYTQYFRNSNSVVVNLCS 75 Query: 326 PTCSS*APSLA 358 PT ++ A A Sbjct: 76 PTTAAVATKKA 86
>ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating| enzyme subunit 2) (Anthracycline-associated resistance ARX) Length = 638 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/37 (32%), Positives = 25/37 (67%) Frame = -3 Query: 384 NGADESAEPASDGAQDEHVGEQMDTDKDDPSQA*EVS 274 NG+D+ A+P++ AQ++ +D+D++ PS + + S Sbjct: 566 NGSDDGAQPSTSTAQEQDDVLIVDSDEEGPSNSTDCS 602
>SCN7A_HUMAN (Q01118) Sodium channel protein type 7 alpha subunit (Sodium| channel protein type VII alpha subunit) (Putative voltage-gated sodium channel alpha subunit Nax) (Sodium channel protein, cardiac and skeletal muscle alpha-subunit) Length = 1682 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = +3 Query: 96 KRRQRKTAIGGGKDV*KHCRNSPCSTHILTTYENSHSFYRPSRPK 230 K Q K+ GG K+ K +S CST + E FY R K Sbjct: 851 KEIQSKSGDGGSKEKIKQSSSSECSTVDIAISEEEEMFYGGERSK 895
>CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precursor (EC| 1.11.1.5) (CCP) Length = 340 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%) Frame = -1 Query: 95 GRCMQNN*GFGDPW--SPVYFFND 30 GRC + N GF PW SP F ND Sbjct: 227 GRCHKQNSGFEGPWTFSPTMFTND 250
>FADB_VIBF1 (Q5E8X6) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA| hydratase (EC 4.2.1.17); Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2. Length = 725 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +1 Query: 67 KPQLFC-MHLPNVVKEKPLLEEAKTSRNTAETL-HVLLISSQRMKTAI 204 +P+ FC MH N V PL+E + + + +T+ V+ +SQ KT I Sbjct: 442 RPENFCGMHFFNPVHRMPLVEVIRGEKTSQQTIDRVVAYASQMGKTPI 489
>HISX_AZOBR (P18786) Putative histidinol dehydrogenase (EC 1.1.1.23) (HDH)| (Fragment) Length = 128 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +1 Query: 214 ALAGQKHNSATDHGHKISSDRHLLCLGRIIFIGVHLLTHMLILSTVAS 357 A AG +H + K S RH+ C + + VH H LS +A+ Sbjct: 64 AHAGGQHQQGREGQEKASGRRHVRCHIPLCALSVHTTMHTHALSGIAT 111
>SYFB_WOLTR (Q5GSH5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 792 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +1 Query: 103 VKEKPLLEEAKTSRNTAETLHVLLIS 180 +KE+PL++ + NT + L VL+IS Sbjct: 480 IKEEPLIDNVEVEINTHDNLRVLMIS 505
>PVG3_SCHPO (Q9USX0) Beta-1,3-galactosyltransferase pvg3 (EC 2.4.1.134)| (Pyruvylated Gal-beta-1,3-epitope synthesis protein 3) (PvGal synthesis protein 3) Length = 378 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +1 Query: 295 RIIFIGVHLLTHMLILSTVASWFSRL 372 RI I VH L + +LSTV++WF ++ Sbjct: 323 RIDAIAVHKLKSIPLLSTVSNWFKKM 348
>GAA1_YEAST (P39012) GPI transamidase component GAA1| Length = 614 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 164 WRVSAVFLDVFASSNSGFSLTTFGR 90 WR+ +V L A NSG +TTFGR Sbjct: 298 WRIQSVTLK--AHGNSGHDITTFGR 320
>Y2654_BACSK (Q5WEM1) UPF0176 protein ABC2654| Length = 322 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = +3 Query: 147 HCRNSPCSTHILTTYENSHSFYRPSRPKAQ 236 +C N C+ IL + EN H + R P+ + Sbjct: 260 NCANPECNKQILCSEENEHKYLRGCTPECR 289
>VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor 3 precursor| (EC 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase receptor FLT4) Length = 1363 Score = 27.3 bits (59), Expect = 9.1 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +3 Query: 45 HWRPWVPKTSVVLHASAKRRQR 110 HWRPW P + + +R+QR Sbjct: 459 HWRPWTPCKTFAQRSLRRRQQR 480 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,157,798 Number of Sequences: 219361 Number of extensions: 1151547 Number of successful extensions: 3336 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3328 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)