ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
2dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
3dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 1e-05
4gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, comp... 42 0.75
5emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 i... 42 0.75
6gb|AC123736.8| Mus musculus chromosome 3, clone RP23-478I18, com... 40 3.0
7gb|AC119876.9| Mus musculus chromosome 3, clone RP24-309A12, com... 40 3.0
8ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.0
9gb|AC130713.4| Mus musculus BAC clone RP23-316K10 from chromosom... 40 3.0
10gb|AC152940.2| Mus musculus BAC clone RP23-264B6 from chromosome... 40 3.0
11gb|AC133189.3| Mus musculus BAC clone RP23-354M9 from chromosome... 40 3.0
12ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitot... 40 3.0
13dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 3.0

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 187      ccggcggggcgaggttgagcaccatgtcgggcccctt 223
                ||||||| ||||||||||||||||||||||| |||||
Sbjct: 29000693 ccggcggcgcgaggttgagcaccatgtcggggccctt 29000729



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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H10
          Length = 166570

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 187   ccggcggggcgaggttgagcaccatgtcgggcccctt 223
             ||||||| ||||||||||||||||||||||| |||||
Sbjct: 15680 ccggcggcgcgaggttgagcaccatgtcggggccctt 15716



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>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full
            insert sequence
          Length = 2957

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 187  ccggcggggcgaggttgagcaccatgtcgggcccctt 223
            ||||||| ||||||||||||||||||||||| |||||
Sbjct: 2650 ccggcggcgcgaggttgagcaccatgtcggggccctt 2614



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>gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, complete sequence
          Length = 157606

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 27     cattcacatcaagaattacatttcc 51
              ||||||||||||||| |||||||||
Sbjct: 118400 cattcacatcaagaaatacatttcc 118424



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>emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 in linkage group 5,
             complete sequence
          Length = 159528

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    tgaagttttacagtgtaaaaa 90
             |||||||||||||||||||||
Sbjct: 11082 tgaagttttacagtgtaaaaa 11062



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>gb|AC123736.8| Mus musculus chromosome 3, clone RP23-478I18, complete sequence
          Length = 189063

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    aagaattacatttccataag 56
             ||||||||||||||||||||
Sbjct: 33846 aagaattacatttccataag 33827



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>gb|AC119876.9| Mus musculus chromosome 3, clone RP24-309A12, complete sequence
          Length = 165926

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   aagaattacatttccataag 56
            ||||||||||||||||||||
Sbjct: 4777 aagaattacatttccataag 4796



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>ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7726.2), mRNA
          Length = 3714

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  tgccgtgcctttcaaattcc 164
            ||||||||||||||||||||
Sbjct: 2280 tgccgtgcctttcaaattcc 2299



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>gb|AC130713.4| Mus musculus BAC clone RP23-316K10 from chromosome 15, complete sequence
          Length = 192020

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      ttgcattctcctctttgcca 25
              ||||||||||||||||||||
Sbjct: 107855 ttgcattctcctctttgcca 107836



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>gb|AC152940.2| Mus musculus BAC clone RP23-264B6 from chromosome 15, complete sequence
          Length = 224704

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      ttgcattctcctctttgcca 25
              ||||||||||||||||||||
Sbjct: 213056 ttgcattctcctctttgcca 213075



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>gb|AC133189.3| Mus musculus BAC clone RP23-354M9 from chromosome 15, complete sequence
          Length = 198577

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    tctcctctttgccatcattc 31
             ||||||||||||||||||||
Sbjct: 16504 tctcctctttgccatcattc 16485



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>ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitotic-specific cyclin
           B1 (LOC489180), mRNA
          Length = 929

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 24  catcattcacatcaagaattacat 47
           |||||||||| |||||||||||||
Sbjct: 105 catcattcacctcaagaattacat 82



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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 34      atcaagaattacatttccat 53
               ||||||||||||||||||||
Sbjct: 2252227 atcaagaattacatttccat 2252208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,231,700
Number of Sequences: 3902068
Number of extensions: 2231700
Number of successful extensions: 38937
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38902
Number of HSP's gapped (non-prelim): 35
length of query: 231
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 209
effective length of database: 17,147,199,772
effective search space: 3583764752348
effective search space used: 3583764752348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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