Clone Name | rbastl16d06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 1e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 187 ccggcggggcgaggttgagcaccatgtcgggcccctt 223 ||||||| ||||||||||||||||||||||| ||||| Sbjct: 29000693 ccggcggcgcgaggttgagcaccatgtcggggccctt 29000729
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 58.0 bits (29), Expect = 1e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 187 ccggcggggcgaggttgagcaccatgtcgggcccctt 223 ||||||| ||||||||||||||||||||||| ||||| Sbjct: 15680 ccggcggcgcgaggttgagcaccatgtcggggccctt 15716
>dbj|AK065611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029I23, full insert sequence Length = 2957 Score = 58.0 bits (29), Expect = 1e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 187 ccggcggggcgaggttgagcaccatgtcgggcccctt 223 ||||||| ||||||||||||||||||||||| ||||| Sbjct: 2650 ccggcggcgcgaggttgagcaccatgtcggggccctt 2614
>gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, complete sequence Length = 157606 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 cattcacatcaagaattacatttcc 51 ||||||||||||||| ||||||||| Sbjct: 118400 cattcacatcaagaaatacatttcc 118424
>emb|BX511157.10| Zebrafish DNA sequence from clone DKEY-197M14 in linkage group 5, complete sequence Length = 159528 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 tgaagttttacagtgtaaaaa 90 ||||||||||||||||||||| Sbjct: 11082 tgaagttttacagtgtaaaaa 11062
>gb|AC123736.8| Mus musculus chromosome 3, clone RP23-478I18, complete sequence Length = 189063 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aagaattacatttccataag 56 |||||||||||||||||||| Sbjct: 33846 aagaattacatttccataag 33827
>gb|AC119876.9| Mus musculus chromosome 3, clone RP24-309A12, complete sequence Length = 165926 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aagaattacatttccataag 56 |||||||||||||||||||| Sbjct: 4777 aagaattacatttccataag 4796
>ref|XM_675903.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7726.2), mRNA Length = 3714 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tgccgtgcctttcaaattcc 164 |||||||||||||||||||| Sbjct: 2280 tgccgtgcctttcaaattcc 2299
>gb|AC130713.4| Mus musculus BAC clone RP23-316K10 from chromosome 15, complete sequence Length = 192020 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ttgcattctcctctttgcca 25 |||||||||||||||||||| Sbjct: 107855 ttgcattctcctctttgcca 107836
>gb|AC152940.2| Mus musculus BAC clone RP23-264B6 from chromosome 15, complete sequence Length = 224704 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ttgcattctcctctttgcca 25 |||||||||||||||||||| Sbjct: 213056 ttgcattctcctctttgcca 213075
>gb|AC133189.3| Mus musculus BAC clone RP23-354M9 from chromosome 15, complete sequence Length = 198577 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tctcctctttgccatcattc 31 |||||||||||||||||||| Sbjct: 16504 tctcctctttgccatcattc 16485
>ref|XM_849931.1| PREDICTED: Canis familiaris similar to G2/mitotic-specific cyclin B1 (LOC489180), mRNA Length = 929 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 24 catcattcacatcaagaattacat 47 |||||||||| ||||||||||||| Sbjct: 105 catcattcacctcaagaattacat 82
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 atcaagaattacatttccat 53 |||||||||||||||||||| Sbjct: 2252227 atcaagaattacatttccat 2252208 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,231,700 Number of Sequences: 3902068 Number of extensions: 2231700 Number of successful extensions: 38937 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38902 Number of HSP's gapped (non-prelim): 35 length of query: 231 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 209 effective length of database: 17,147,199,772 effective search space: 3583764752348 effective search space used: 3583764752348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)