ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 p... 29 2.5
2SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 2.5
3LASS1_HUMAN (P27544) LAG1 longevity assurance homolog 1 (UOG-1 p... 28 5.5
4K1718_HUMAN (Q6ZMT4) Protein KIAA1718 28 7.2
5K1718_MOUSE (Q3UWM4) Protein KIAA1718 28 7.2
6Y2077_ARCFU (O28202) Hypothetical protein AF2077 precursor 28 7.2

>LASS1_MOUSE (P27545) LAG1 longevity assurance homolog 1 (UOG-1 protein)|
          Length = 350

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -1

Query: 316 DGGEVQLGVGEQRSPWEAHGGERHQLQGLAVRLACCGFFSKMFVYGWL----FPVSKL 155
           D  +VQL   +    ++A GG  H+L GL   L C  F    F + W     FP+  L
Sbjct: 210 DVSDVQLEFTKLNIYFKARGGAYHRLHGLVANLGCLSF---CFCWFWFRLYWFPLKVL 264



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>SYV_ONYPE (Q6YRJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 882

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 260 VSFPWRTLLSDAELYFSSVDDATTKPEPTF 349
           V FP  + LSDA L  S ++ ATT+PE  F
Sbjct: 204 VDFPTNSNLSDASLVPSFLEIATTRPETMF 233



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>LASS1_HUMAN (P27544) LAG1 longevity assurance homolog 1 (UOG-1 protein) (LAG1|
           protein)
          Length = 350

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -1

Query: 316 DGGEVQLGVGEQRSPWEAHGGERHQLQGLAVRLACCGF-FSKMFVYGWLFPVSKL 155
           D  +VQL   +    +++ GG  H+L  LA  L C  F FS  +   + FP+  L
Sbjct: 210 DISDVQLEFTKLNIYFKSRGGSYHRLHALAADLGCLSFGFSWFWFRLYWFPLKVL 264



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>K1718_HUMAN (Q6ZMT4) Protein KIAA1718|
          Length = 941

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 219 LHAVVSSQKCLCMGGCFLY 163
           +HAV++SQ C+  GG FL+
Sbjct: 353 IHAVLTSQDCMAFGGNFLH 371



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>K1718_MOUSE (Q3UWM4) Protein KIAA1718|
          Length = 940

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 219 LHAVVSSQKCLCMGGCFLY 163
           +HAV++SQ C+  GG FL+
Sbjct: 353 IHAVLTSQDCMAFGGNFLH 371



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>Y2077_ARCFU (O28202) Hypothetical protein AF2077 precursor|
          Length = 270

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 290 DAELYFSSVDDATTKPEPTFQY 355
           D ELYFS+ +D  T   PTF Y
Sbjct: 72  DVELYFSTPNDILTFSNPTFLY 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,085,026
Number of Sequences: 219361
Number of extensions: 784748
Number of successful extensions: 2085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2084
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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