>SODM2_HALME (O08460) Superoxide dismutase [Mn] 2 (EC 1.15.1.1) (Fragment)|
          Length = 146

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 148 LIYEGYVQQATALHVNKHPDAPIWRTWP-NAMHVWE 252
           L+Y+   +Q   L V KH D  +W   P  A+ VWE
Sbjct: 94  LVYDPVTKQLRNLAVQKHNDGALWSAHPILALDVWE 129

>PDR1_ORYSA (Q7PC80) Probable pleiotropic drug resistance protein 1|
          Length = 1468

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 116  NPFHHFS*SVDCCPIWWAWNCTCCSSDFTVF 24
            N F  F  S    P+WW W C  C   +T++
Sbjct: 1373 NLFTGFVISRPATPVWWRWYCWICPVAWTLY 1403

>VGFR3_MOUSE (P35917) Vascular endothelial growth factor receptor 3 precursor|
           (EC 2.7.10.1) (VEGFR-3) (Tyrosine-protein kinase
           receptor FLT4)
          Length = 1363

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 133 PPMTNLIYEGYV-QQATALHVNKHPDAPIWRTWPNAMHVWEAGGRN 267
           PP  N+  + YV     +L ++     P+  TWP A  V   GG++
Sbjct: 29  PPTLNITEDSYVIDTGDSLSISCRGQHPLEWTWPGAQEVLTTGGKD 74

>PDR3_ORYSA (Q8GU90) Pleiotropic drug resistance protein 3|
          Length = 1457

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 77   PIWWAWNCTCCSSDFTVF 24
            PIWW W C  C   +T++
Sbjct: 1375 PIWWRWYCWACPVAWTLY 1392

>CNTN4_RAT (Q62845) Contactin-4 precursor (Brain-derived immunoglobulin|
            superfamily protein 2) (BIG-2)
          Length = 1026

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 117  INLFSSSDDKPNLRRVRTAGNSTACK*APGCANLENLAECHACLGSRWTKRAGYEGASLN 296
            +  +   D + N R++RT GN T+ K      NL+  A  H  + +  +   G   A++N
Sbjct: 838  VKYWRHDDKEENARKIRTVGNQTSTK----ITNLKGNALYHLSVKAYNSAGTGPSSAAVN 893

Query: 297  IS 302
            ++
Sbjct: 894  VT 895

>NIA2_HORVU (P27969) Nitrate reductase [NADH] (EC 1.7.1.1) (NR) (Fragment)|
          Length = 912

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 133 PPMTNLIYEGYVQQATALHVNKHPDAP--IWRTWPNAMHVWEAGGR-NELGMKELRSTFP 303
           PP+  L++ G++  A   +V  H   P   W TW   + V     R   L M EL + FP
Sbjct: 119 PPLARLMHHGFITPAPLHYVRNHGAVPRGDWATW--TVEVTGLVRRPARLTMDELANGFP 176

Query: 304 MA 309
            A
Sbjct: 177 AA 178

>PDR2_ORYSA (Q8GU92) Probable pleiotropic drug resistance protein 2|
          Length = 1464

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 77   PIWWAWNCTCCSSDFTVF 24
            PIWW W C  C   +T++
Sbjct: 1382 PIWWRWYCWICPVAWTLY 1399

>NIA1_HORVU (P27967) Nitrate reductase [NADH] (EC 1.7.1.1) (NR)|
          Length = 915

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +1

Query: 133 PPMTNLIYEGYVQQATALHVNKHPDAP--IWRTWPNAMHVWEAGGR-NELGMKELRSTFP 303
           PP+  L++ G++  A   +V  H   P   W TW   + V     R   L M EL + FP
Sbjct: 122 PPLARLMHHGFITPAPLHYVRNHGAVPRGDWATW--TVEVTGLVRRPARLTMDELANGFP 179

Query: 304 MA 309
            A
Sbjct: 180 AA 181

>BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Cellulose|
           synthase regulatory subunit) (Cellulose synthase protein
           B) (CDGBP)
          Length = 802

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 130 LPPMTNLIYEGYVQQATALHVNKHPDAPIWRTWPNAMHV 246
           L P + L  EGY   A A+     PD   WR  PN ++V
Sbjct: 388 LVPDSALQAEGYAPGALAVPFRVSPDLYTWRDRPNKLNV 426

>C4AA1_DROME (Q9V7G5) Probable cytochrome P450 4aa1 (EC 1.14.-.-) (CYPIVAA1)|
          Length = 514

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 181 LLPAVRTL-RKLGLSSEEENKLIIHFTISASL*IVAPYGGHGIAHVVP 41
           L P+V  + RKLG    EE +L  H   + S   + PY  H +AH+ P
Sbjct: 378 LYPSVPLIARKLG----EEVRLAKHTLPAGSNVFICPYATHRLAHIYP 421

>SODM2_HALVO (Q03301) Superoxide dismutase [Mn] 2 (EC 1.15.1.1)|
          Length = 199

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 148 LIYEGYVQQATALHVNKHPDAPIWRTWP-NAMHVWEAGGRNELG 276
           L+Y+ +  Q   + V+KH    +W + P  A+ VWE    ++ G
Sbjct: 125 LVYDSFSNQLRNVVVDKHDQGALWGSHPILALDVWEHSYYHDYG 168

>THYX_PYRAE (Q8ZWD6) Thymidylate synthase thyX (EC 2.1.1.148) (TS) (TSase)|
          Length = 244

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 163 YVQQATALHVNKHPDAPIWRTWPN-AMHVWE 252
           Y  QA   HV     A  WR WPN A  VWE
Sbjct: 168 YAAQAEIRHVCWQMFAHAWRLWPNLARLVWE 198

>KUP_VIBCH (Q9KM59) Probable potassium transport system protein kup|
          Length = 620

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 256 LLPKHA-WHSAKFSRLAHPGAYLHAVLLPAVRTLRKLGL 143
           LL  HA WH+ +  R  +P   +H VLL    TL  LGL
Sbjct: 181 LLGAHAIWHAPQVLRALNPAYAVHFVLLYGQHTLFILGL 219

>PDR4_ORYSA (Q8GU89) Pleiotropic drug resistance protein 4|
          Length = 1450

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 77   PIWWAWNCTCCSSDFTVF 24
            P+WW W C  C   +T++
Sbjct: 1367 PVWWRWYCWICPVAWTLY 1384

>HPS1_MOUSE (O08983) Hermansky-Pudlak syndrome 1 protein homolog|
          Length = 704

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -1

Query: 217 RLAHPGAYLHAVLLPAVRTLRKLGLSSEEENKLIIHFTISASL*IVAPYGGHGIAHVVPV 38
           RL HP     ++       ++ +  S E   + ++H  +     ++A Y GHG + + P 
Sbjct: 173 RLIHPQLCEQSIETLERHVVQAINASPERGGEEVLHAFLLVHCKLLAFYSGHGASTLRPA 232

Query: 37  ILLSL 23
            LL+L
Sbjct: 233 DLLAL 237

>SODM1_HALVO (Q03300) Superoxide dismutase [Mn] 1 (EC 1.15.1.1)|
          Length = 200

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 148 LIYEGYVQQATALHVNKHPDAPIWRTWP-NAMHVWEAGGRNELG 276
           L+Y+ +  Q   + V+KH    +W + P  A+ VWE    ++ G
Sbjct: 126 LVYDSFSNQLRNVVVDKHDQGALWGSHPILALDVWEHSYYHDYG 169

>SODM1_HALME (O08461) Superoxide dismutase [Mn] 1 (EC 1.15.1.1) (Fragment)|
          Length = 144

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 148 LIYEGYVQQATALHVNKHPDAPIWRTWP-NAMHVWEAGGRNELG 276
           L+Y+ +  Q   + V+KH    +W + P  A+ VWE    ++ G
Sbjct: 92  LVYDSFSNQLRNVVVDKHDQGALWGSHPILALDVWEHSYYHDYG 135

>MT_PARLI (P80367) Metallothionein (MT)|
          Length = 65

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 248 QTCMAFGQVLQIGASGCLFTCSAVAC-CT 165
           Q C   G+  + GAS C  TCS  AC CT
Sbjct: 19  QECCITGKCCKDGASVCCGTCSNAACKCT 47

>YB78_YEAST (P38324) Hypothetical 35.9 kDa protein in MCX1-PBP2 intergenic|
           region
          Length = 304

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 310 KPWEMLSEAPSYPARFVHLLPKHAW 236
           +PWEM+     +P++   L  +HAW
Sbjct: 61  RPWEMIMIVRGFPSKIAALQFEHAW 85

>CNTN4_MOUSE (Q69Z26) Contactin-4 precursor (Brain-derived immunoglobulin|
            superfamily protein 2) (BIG-2)
          Length = 1026

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +3

Query: 117  INLFSSSDDKPNLRRVRTAGNSTACK*APGCANLENLAECHACLGSRWTKRAGYEGASLN 296
            +  +   D + N +++RT GN T+ K      NL+  A  H  + +  +   G   A++N
Sbjct: 838  VKYWRHDDKEENAKKIRTVGNQTSTK----ITNLKGSALYHLSVKAYNSAGTGPSSATVN 893

Query: 297  IS 302
            ++
Sbjct: 894  VT 895

>CNTN4_HUMAN (Q8IWV2) Contactin-4 precursor (Brain-derived immunoglobulin|
            superfamily protein 2) (BIG-2)
          Length = 1026

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 117  INLFSSSDDKPNLRRVRTAGNSTACK*APGCANLENLAECHACLGSRWTKRAGYEGASLN 296
            +  +   D + N R++RT GN T+ K      NL+     H  + +  +   G   A++N
Sbjct: 838  VKYWRHEDKEENARKIRTVGNQTSTK----ITNLKGSVLYHLAVKAYNSAGTGPSSATVN 893

Query: 297  IS 302
            ++
Sbjct: 894  VT 895

>Y113_ENCCU (Q8ST53) Hypothetical protein ECU01_0130/ECU01_1480/ECU08_0060|
          Length = 366

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 304 WEMLSEAPSYPARFVHLLPKHAWH 233
           WE+  E   Y  R + LLP  AWH
Sbjct: 83  WEIEKEERRYTERVIKLLPGLAWH 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,968,679
Number of Sequences: 219361
Number of extensions: 981100
Number of successful extensions: 2821
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2821
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)