ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16c12 |
|---|---|
| Clone Library Name | barley_pub |
>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] (Fragment) Length = 313 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 268 YTWMNQKPASWTHDTKRLIIL*QKTLETKQMPWND 372 Y W NQ P+S++ ++I L + T Q W+D Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 28.9 bits (63), Expect = 3.2 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -3 Query: 67 AVIRHGKWYICWMLLATS 14 AV+ G W +CWM+LA+S Sbjct: 132 AVMTSGGWRVCWMILASS 149
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 9/98 (9%) Frame = +3 Query: 6 FFLDVANNIQQI---------YHFPCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELF 158 +++ VA++++Q Y F C +S G N H V HS+ K L Sbjct: 38 YYVGVASDVEQQGADAFDPEEYQFTCLTYKESEGALNEHMTSLASVLKVS-HSVAKLILV 96 Query: 159 HTHTKFQTKIDRYSTKFMFLLYDLIWRPSSSHPTISLH 272 + H + +DRY + LL + +P+ S + H Sbjct: 97 NFHWQVSEILDRYKSNSAQLLVEARVQPNPSKHVPTSH 134
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -2 Query: 182 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 69 G FC R + FSF + W S+++ L + + +P GGV Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209
>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 702 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -3 Query: 199 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 53 EY + +V + FVC KS P C+ +GRA H VL+F SA RH Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 202 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 41 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 40 ICW 32 + + Sbjct: 3116 VMY 3118
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 202 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 41 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 40 ICW 32 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 202 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 41 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 40 ICW 32 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 202 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 41 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 40 ICW 32 + + Sbjct: 3116 VMY 3118
>TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-) (Tyr-DNA| phosphodiesterase 1) Length = 608 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/69 (21%), Positives = 33/69 (47%) Frame = -3 Query: 319 VSWCHVSMKLVSGSSMCRLMVGWEEEGRQIKSYSRNMNFVEYLSILVWNFVCVWKSSLFP 140 +S C + + G+ ++M+ EEG ++ ++ N+ ++ +W S L+P Sbjct: 248 ISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQ----KTQGIWLSPLYP 303 Query: 139 RECTGTGRA 113 R GT ++ Sbjct: 304 RIADGTHKS 312
>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1885 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +1 Query: 91 HTDNVDNMLDQYQYTLWEKENSST 162 + DNVD +L+QY+Y L+ + T Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637
>FGRL1_CHICK (Q7T2H2) Fibroblast growth factor receptor-like 1 precursor| Length = 487 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = +3 Query: 51 PCRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTKFQTKIDRYSTKFMFLLYDL 230 P T D G T QC + PV KR + T +K+ + ID KF+ L Sbjct: 247 PVNTTVDYGGT--TSFQCKVRSDVKPVIQWLKRVEYGTESKYNSTIDVGGQKFVVLPTGE 304 Query: 231 IW-RPSSSH 254 +W RP S+ Sbjct: 305 VWSRPDGSY 313
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 202 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 32 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3150 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3205
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 202 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 32 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3153 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3208
>SFRP5_BOVIN (Q9XSC1) Secreted frizzled-related protein 5 precursor (sFRP-5)| Length = 315 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 118 DQYQYTLWEKENSSTRTQNSKPK*TDTPQSSCFCYMI*FGDLLLP--IPPSAYTWMNQKP 291 ++Y Y W+ E R+ + P+ D P C+ + + + LP + + + Q+ Sbjct: 28 EEYDYYGWQTEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQA 87 Query: 292 ASW 300 +SW Sbjct: 88 SSW 90
>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7124 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 202 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 32 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3096 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3151
>SFRP5_HUMAN (Q5T4F7) Secreted frizzled-related protein 5 precursor (sFRP-5)| (Secreted apoptosis-related protein 3) (SARP-3) (Frizzled-related protein 1b) (FRP-1b) Length = 317 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 118 DQYQYTLWEKENSSTRTQNSKPK*TDTPQSSCFCYMI*FGDLLLP--IPPSAYTWMNQKP 291 ++Y Y W+ E R+ + P+ D P C+ + + + LP + + + Q+ Sbjct: 30 EEYDYYGWQAEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQA 89 Query: 292 ASW 300 +SW Sbjct: 90 SSW 92
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 27.7 bits (60), Expect = 7.0 Identities = 8/17 (47%), Positives = 11/17 (64%) Frame = +1 Query: 256 PPSAYTWMNQKPASWTH 306 PPS++ W + P WTH Sbjct: 41 PPSSFGWSDPDPCKWTH 57
>GALC_HUMAN (P54803) Galactocerebrosidase precursor (EC 3.2.1.46) (GALCERase)| (Galactosylceramidase) (Galactosylceramide beta-galactosidase) (Galactocerebroside beta-galactosidase) Length = 669 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +3 Query: 180 TKIDRYSTKFMFLLYDLIW-RPSSSHPTISLHMDEPETSFMDT*HQETHHPL 332 TK+ + S +F+F D +W S T+SLH DE T T ++ +PL Sbjct: 412 TKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPL 463
>NPT2B_RAT (Q9JJ09) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 me Length = 695 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%) Frame = -3 Query: 193 LSILVWNFVCVWKSSL-------------FPRECTGTGRACCQHCLCV 89 L + WNF+ +W SL F R C R CC+ C V Sbjct: 585 LKLRDWNFLPLWMHSLKPWDNIISLATSCFQRRCCCCCRVCCRVCCMV 632
>NPT2B_MOUSE (Q9DBP0) Sodium-dependent phosphate transport protein 2B| (Sodium/phosphate cotransporter 2B) (Na(+)/Pi cotransporter 2B) (Sodium-phosphate transport protein 2B) (Na(+)-dependent phosphate cotransporter 2B) (NaPi-2b) (Solute carrier family 34 Length = 697 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%) Frame = -3 Query: 193 LSILVWNFVCVWKSSL-------------FPRECTGTGRACCQHCLCV 89 L + WNF+ +W SL F R C R CC+ C V Sbjct: 585 LKLRDWNFLPLWMHSLKPWDNVISLATTCFQRRCCCCCRVCCRVCCMV 632
>LEU2_SYNP6 (Q5MZY3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 468 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 286 SGSSMCRLMVGWEEEGRQIKSYSRNMNF 203 +G SMC M + EGRQI + S N NF Sbjct: 405 AGCSMCLAMNPDKLEGRQISASSSNRNF 432 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,838,292 Number of Sequences: 219361 Number of extensions: 1385248 Number of successful extensions: 3601 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3468 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3599 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
